Denize Atan

Dr. Denize Atan

University of Bristol, Bristol, City of Bristol, UK

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2018 in BMJ
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Journal Article
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EMEdward Mountjoy
Edward Mountjoy
NDNeil M Davies
Neil M Davies
DPDenis Plotnikov
Denis Plotnikov
GSGeorge Davey Smith
George Davey Smith
Santiago RodriguezSantiago Rodriguez
Santiago Rodriguez
DADenize Atan
Denize Atan
Objectives To determine whether more years spent in education is a causal risk factor for myopia, or whether myopia is a causal risk factor for more years in education. Design Bidirectional, two sample mendelian randomisation study. Setting Publically available genetic data from two consortiums applied to a large, independent population cohort. Genetic variants used as proxies for myopia and years of education were derived from two large genome wide association studies: 23andMe and Social Science Genetic Association Consortium (SSGAC), respectively. Participants 67 798 men and women from England, Scotland, and Wales in the UK Biobank cohort with available information for years of completed education and refractive error. Main outcome measures Mendelian randomisation analyses were performed in two directions: the first exposure was the genetic predisposition to myopia, measured with 44 genetic variants strongly associated with myopia in 23andMe, and the outcome was years in education; and the second exposure was the genetic predisposition to higher levels of education, measured with 69 genetic variants from SSGAC, and the outcome was refractive error. Results Conventional regression analyses of the observational data suggested that every additional year of education was associated with a more myopic refractive error of −0.18 dioptres/y (95% confidence interval −0.19 to −0.17; P<2e-16). Mendelian randomisation analyses suggested the true causal effect was even stronger: −0.27 dioptres/y (−0.37 to −0.17; P=4e-8). By contrast, there was little evidence to suggest myopia affected education (years in education per dioptre of refractive error −0.008 y/dioptre, 95% confidence interval −0.041 to 0.025, P=0.6). Thus, the cumulative effect of more years in education on refractive error means that a university graduate from the United Kingdom with 17 years of education would, on average, be at least −1 dioptre more myopic than someone who left school at age 16 (with 12 years of education). Myopia of this magnitude would be sufficient to necessitate the use of glasses for driving. Sensitivity analyses showed minimal evidence for genetic confounding that could have biased the causal effect estimates. Conclusions This study shows that exposure to more years in education contributes to the rising prevalence of myopia. Increasing the length of time spent in education may inadvertently increase the prevalence of myopia and potential future visual disability.

7 August 2006 in Human Molecular Genetics
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ACAmanda J. Churchill
Amanda J. Churchill
JCJames G. Carter
James G. Carter
HLHelen C. Lovell
Helen C. Lovell
CRConor Ramsden
Conor Ramsden
STSteven J. Turner
Steven J. Turner
DADenize Atan
Denize Atan
Age-related macular degeneration (AMD) is the most common cause of blindness in the elderly. Linkage has been shown to the vascular endothelial growth factor (VEGF) gene and ocular levels of VEGF are raised in individuals with the neovascular form of disease. To examine the role of VEGF further, we conducted a case–control study where 45 individuals with neovascular AMD and 94 age-matched controls were genotyped for 14 single nucleotide polymorphisms (SNPs) in the VEGF promoter and gene. The single SNP +674 CC genotype was significantly associated with AMD (OR=2.40, 95%CI 1.09–5.26, P=0.027). Haplotype analysis of SNPs +674, +4618, +5092, +9162 and +9512 revealed that CTCCT and TCACC were associated with AMD (OR=15.77, 95% CI 1.91–130.24, P=0.0161 and OR=9.95, 95%CI 3.22–30.74, P=0.000053, respectively). The haplotype TCACT was associated with the control group (P=0.0001832). Furthermore, haplotype analysis of promoter SNPs revealed that possession of the −460T, −417T, −172C, −165C, −160C, −152G, −141A, −116A, +405C haplotype was strongly associated with AMD (OR=18.24, 95%CI 2.25–148.25, P=0.0074). This is the most extensive analysis of the VEGF gene in AMD, demonstrating a clear association with the exudative form of disease, thereby creating the possibility for predictive testing. Smoking, high fat intake and hypertension are negative environmental risk factors in AMD, whereas increased consumption of dietary antioxidants can have a protective effect. Identification of those at risk in the population would allow individual counselling with lifestyle advice to reduce the risks of blindness. (Genbank accession nos M63971 and AF437895).

1 January 2012 in Neuron
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Journal Article
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SRSarah E. Ross
Sarah E. Ross
AMAlejandra E. McCord
Alejandra E. McCord
CJCynthia Jung
Cynthia Jung
DADenize Atan
Denize Atan
SMStephanie I. Mok
Stephanie I. Mok
MGMichael E. Greenberg
Michael E. Greenberg

12 May 2021 in PLOS Genetics
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HCHannah Currant
Hannah Currant
PHPirro Hysi
Pirro Hysi
TFTomas W. Fitzgerald
Tomas W. Fitzgerald
PGPuya Gharahkhani
Puya Gharahkhani
PBPieter W. M. Bonnemaijer
Pieter W. M. Bonnemaijer
AKAnthony P. Khawaja
Anthony P. Khawaja
Optical Coherence Tomography (OCT) enables non-invasive imaging of the retina and is used to diagnose and manage ophthalmic diseases including glaucoma. We present the first large-scale genome-wide association study of inner retinal morphology using phenotypes derived from OCT images of 31,434 UK Biobank participants. We identify 46 loci associated with thickness of the retinal nerve fibre layer or ganglion cell inner plexiform layer. Only one of these loci has been associated with glaucoma, and despite its clear role as a biomarker for the disease, Mendelian randomisation does not support inner retinal thickness being on the same genetic causal pathway as glaucoma. We extracted overall retinal thickness at the fovea, representative of foveal hypoplasia, with which three of the 46 SNPs were associated. We additionally associate these three loci with visual acuity. In contrast to the Mendelian causes of severe foveal hypoplasia, our results suggest a spectrum of foveal hypoplasia, in part genetically determined, with consequences on visual function.

1 January 2020 in Ophthalmology
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AKAnthony P. Khawaja
Anthony P. Khawaja
SCSharon Chua
Sharon Chua
PHPirro G. Hysi
Pirro G. Hysi
SGStelios Georgoulas
Stelios Georgoulas
HCHannah Currant
Hannah Currant
YZYalin Zheng
Yalin Zheng

1 August 2010 in Investigative Ophthalmology & Visual Science
Verified
Journal Article
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DADenize Atan
Denize Atan
SFSamantha Fraser-Bell
Samantha Fraser-Bell
JPJarka Plskova
Jarka Plskova
LKLucia Kuffova
Lucia Kuffova
AHAideen Hogan
Aideen Hogan
ACAmanda J. Churchill
Amanda J. Churchill
Purpose. Noninfectious uveitis is a sight-threatening immune-mediated intraocular inflammatory disorder. The inheritance of uveitis in multiplex families and its association with known monogenic and polygenic immunologic disorders suggests that common genetic variants underlie susceptibility to uveitis as well as to other immunologic disorders. TNFA and IL10 are strong candidate genes, given the influence of these cytokines on inflammation, immune tolerance, and apoptosis. Methods. The role of 12 polymorphisms spanning the TNFA and IL10 genomic regions was investigated in 192 uveitis patients and 92 population control subjects from four regional centers in the United Kingdom and Republic of Ireland. Results. The results demonstrate that uveitis is associated with three haplotype-tagging SNPs (htSNPs) in the IL10 gene: htSNP2 (rs6703630), htSNP5 (rs2222202), and htSNP6 (rs3024490). IL10htSNP2AG/htSNP5TC was the most significantly associated haplotype (P = 0.00085), whereas the LTA+252AA/TNFhtSNP2GG haplotype was protective (P = 0.00031). Furthermore, subgroup analysis showed that the frequency of the TNFd4 allele was higher in patients with nonremitting ocular disease and/or those requiring higher levels of maintenance immunosuppression. Although these associations lost significance after Bonferroni correction, they infer a relationship that may be validated by a larger study. Conclusions. Since these variants are implicated in the susceptibility and severity of several immunologic disorders, the results support the hypothesis that common genetic determinants influence shared mechanisms of autoimmunity.