M. Alvaro Berbís

Dr. M. Alvaro Berbís

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Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 January 2023 in EBioMedicine
Verified
Journal Article
Open access
MBM. Alvaro Berbís
M. Alvaro Berbís
DMDavid S. McClintock
David S. McClintock
ABAndrey Bychkov
Andrey Bychkov
JLJeroen Van der Laak
Jeroen Van der Laak
LPLiron Pantanowitz
Liron Pantanowitz
JSJeanne Shen
Jeanne Shen
Artificial intelligence (AI) is rapidly fuelling a fundamental transformation in the practice of pathology. However, clinical integration remains challenging, with no AI algorithms to date in routine adoption within typical anatomic pathology (AP) laboratories. This survey gathered current expert perspectives and expectations regarding the role of AI in AP from those with first-hand computational pathology and AI experience. Perspectives were solicited using the Delphi method from 24 subject matter experts between December 2020 and February 2021 regarding the anticipated role of AI in pathology by the year 2030. The study consisted of three consecutive rounds: 1) an open-ended, free response questionnaire generating a list of survey items; 2) a Likert-scale survey scored by experts and analysed for consensus; and 3) a repeat survey of items not reaching consensus to obtain further expert consensus. Consensus opinions were reached on 141 of 180 survey items (78.3%). Experts agreed that AI would be routinely and impactfully used within AP laboratory and pathologist clinical workflows by 2030. High consensus was reached on 100 items across nine categories encompassing the impact of AI on (1) pathology key performance indicators (KPIs) and (2) the pathology workforce and specific tasks performed by (3) pathologists and (4) AP lab technicians, as well as (5) specific AI applications and their likelihood of routine use by 2030, (6) AI's role in integrated diagnostics, (7) pathology tasks likely to be fully automated using AI, and (8) regulatory/legal and (9) ethical aspects of AI integration in pathology. This systematic consensus study details the expected short-to-mid-term impact of AI on pathology practice. These findings provide timely and relevant information regarding future care delivery in pathology and raise key practical, ethical, and legal challenges that must be addressed prior to AI's successful clinical implementation. No specific funding was provided for this study.

2 May 2023 in Journal of Medical Systems
Verified
Journal Article
Open access
PDF file
DADeevyankar Agarwal
Deevyankar Agarwal
MBM. Alvaro Berbís
M. Alvaro Berbís
AAAntonio Luna Alcalá
Antonio Luna Alcalá
VLVivian Lipari
Vivian Lipari
JBJulien Brito Ballester
Julien Brito Ballester
Isabel De La Torre DíezIsabel De La Torre Díez
Isabel De La Torre Díez
Alzheimer's disease (AD) poses an enormous challenge to modern healthcare. Since 2017, researchers have been using deep learning (DL) models for the early detection of AD using neuroimaging biomarkers. In this paper, we implement the EfficietNet-b0 convolutional neural network (CNN) with a novel approach—"fusion of end-to-end and transfer learning"—to classify different stages of AD. 245 T1W MRI scans of cognitively normal (CN) subjects, 229 scans of AD subjects, and 229 scans of subjects with stable mild cognitive impairment (sMCI) were employed. Each scan was preprocessed using a standard pipeline. The proposed models were trained and evaluated using preprocessed scans. For the sMCI vs. AD classification task we obtained 95.29% accuracy and 95.35% area under the curve (AUC) for model training and 93.10% accuracy and 93.00% AUC for model testing. For the multiclass AD vs. CN vs. sMCI classification task we obtained 85.66% accuracy and 86% AUC for model training and 87.38% accuracy and 88.00% AUC for model testing. Based on our experimental results, we conclude that CNN-based DL models can be used to analyze complicated MRI scan features in clinical settings.

27 October 2023 in Abdominal Radiology
Verified
Journal Article
Closed access
PDF file
MBM. Alvaro Berbís
M. Alvaro Berbís
FGFélix Paulano Godino
Félix Paulano Godino
JRJúlia Rodríguez-Comas
Júlia Rodríguez-Comas
ENEnrique Nava
Enrique Nava
RGRoberto García-Figueiras
Roberto García-Figueiras
ALAntonio Luna
Antonio Luna

1 May 2024 in Movement Disorders Clinical Practice
Verified
Journal Article
Closed access
SQSonia Quintas
Sonia Quintas
RSReyes Sanles‐Falagan
Reyes Sanles‐Falagan
MBM. Alvaro Berbís
M. Alvaro Berbís

1 October 2019 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Closed access
HSHamid Sarmadi
Hamid Sarmadi
RMRafael Munoz-Salinas
Rafael Munoz-Salinas
MBM. Alvaro Berbís
M. Alvaro Berbís
AAAntonio Luna Alcalá
Antonio Luna Alcalá
RMRafael Medina-Carnicer
Rafael Medina-Carnicer

25 July 2022 in Mathematics
Verified
Journal Article
Open access
PDF file
DADeevyankar Agarwal
Deevyankar Agarwal
MBM. Alvaro Berbís
M. Alvaro Berbís
TMTeodoro Martín-Noguerol
Teodoro Martín-Noguerol
AAAntonio Luna Alcalá
Antonio Luna Alcalá
SGSara Carmen Parrado García
Sara Carmen Parrado García
Isabel De La Torre DíezIsabel De La Torre Díez
Isabel De La Torre Díez
This study uses magnetic resonance imaging (MRI) data to propose end-to-end learning implementing volumetric convolutional neural network (CNN) models for two binary classification tasks: Alzheimer’s disease (AD) vs. cognitively normal (CN) and stable mild cognitive impairment (sMCI) vs. AD. The baseline MP-RAGE T1 MR images of 245 AD patients and 229 with sMCI were obtained from the ADNI dataset, whereas 245 T1 MR images of CN people were obtained from the IXI dataset. All of the images were preprocessed in four steps: N4 bias field correction, denoising, brain extraction, and registration. End-to-end-learning-based deep CNNs were used to discern between different phases of AD. Eight CNN-based architectures were implemented and assessed. The DenseNet264 excelled in both types of classification, with 82.5% accuracy and 87.63% AUC for training and 81.03% accuracy for testing relating to the sMCI vs. AD and 100% accuracy and 100% AUC for training and 99.56% accuracy for testing relating to the AD vs. CN. Deep learning approaches based on CNN and end-to-end learning offer a strong tool for examining minute but complex properties in MR images which could aid in the early detection and prediction of Alzheimer’s disease in clinical settings.