Aysu Yarman

Dr. Aysu Yarman

Molecular Biotechnology, Faculty of Science, Turkish-German University, Sahinkaya Cad. 86, Beykoz, Istanbul 34820, Turkey

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 May 2020 in Sensors
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Journal Article
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Aysu YarmanAysu Yarman
Aysu Yarman
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
Electrochemical methods offer the simple characterization of the synthesis of molecularly imprinted polymers (MIPs) and the readouts of target binding. The binding of electroinactive analytes can be detected indirectly by their modulating effect on the diffusional permeability of a redox marker through thin MIP films. However, this process generates an overall signal, which may include nonspecific interactions with the nonimprinted surface and adsorption at the electrode surface in addition to (specific) binding to the cavities. Redox-active low-molecular-weight targets and metalloproteins enable a more specific direct quantification of their binding to MIPs by measuring the faradaic current. The in situ characterization of enzymes, MIP-based mimics of redox enzymes or enzyme-labeled targets, is based on the indication of an electroactive product. This approach allows the determination of both the activity of the bio(mimetic) catalyst and of the substrate concentration.

18 July 2016 in Biosensors
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MMMarcus M. Menger
Marcus M. Menger
Aysu YarmanAysu Yarman
Aysu Yarman
JEJulia Erdossy
Julia Erdossy
HYHuseyin Bekir Yildiz
Huseyin Bekir Yildiz
RGRóbert E. Gyurcsányi
Róbert E. Gyurcsányi
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
Biomimetic binders and catalysts have been generated in order to substitute the biological pendants in separation techniques and bioanalysis. The two major approaches use either “evolution in the test tube” of nucleotides for the preparation of aptamers or total chemical synthesis for molecularly imprinted polymers (MIPs). The reproducible production of aptamers is a clear advantage, whilst the preparation of MIPs typically leads to a population of polymers with different binding sites. The realization of binding sites in the total bulk of the MIPs results in a higher binding capacity, however, on the expense of the accessibility and exchange rate. Furthermore, the readout of the bound analyte is easier for aptamers since the integration of signal generating labels is well established. On the other hand, the overall negative charge of the nucleotides makes aptamers prone to non-specific adsorption of positively charged constituents of the sample and the “biological” degradation of non-modified aptamers and ionic strength-dependent changes of conformation may be challenging in some application.

30 November 2019 in Polymers
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GOGoksu Ozcelikay
Goksu Ozcelikay
SEVINC KURBANOGLUSEVINC KURBANOGLU
SEVINC KURBANOGLU
XZXiaorong Zhang
Xiaorong Zhang
CSCagla Soz
Cagla Soz
Ulla WollenbergerUlla Wollenberger
Ulla Wollenberger
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
Molecularly imprinted polymers (MIPs) mimic the binding sites of antibodies by substituting the amino acid-scaffold of proteins by synthetic polymers. In this work, the first MIP for the recognition of the diagnostically relevant enzyme butyrylcholinesterase (BuChE) is presented. The MIP was prepared using electropolymerization of the functional monomer o-phenylenediamine and was deposited as a thin film on a glassy carbon electrode by oxidative potentiodynamic polymerization. Rebinding and removal of the template were detected by cyclic voltammetry using ferricyanide as a redox marker. Furthermore, the enzymatic activity of BuChE rebound to the MIP was measured via the anodic oxidation of thiocholine, the reaction product of butyrylthiocholine. The response was linear between 50 pM and 2 nM concentrations of BuChE with a detection limit of 14.7 pM. In addition to the high sensitivity for BuChE, the sensor responded towards pseudo-irreversible inhibitors in the lower mM range.

23 February 2016 in Sensors
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LPLei Peng
Lei Peng
Aysu YarmanAysu Yarman
Aysu Yarman
KJKatharina Janet Jetzschmann
Katharina Janet Jetzschmann
JJJae-Hun Jeoung
Jae-Hun Jeoung
DSDaniel Schad
Daniel Schad
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
For the first time a molecularly imprinted polymer (MIP) with direct electron transfer (DET) and bioelectrocatalytic activity of the target protein is presented. Thin films of MIPs for the recognition of a hexameric tyrosine-coordinated heme protein (HTHP) have been prepared by electropolymerization of scopoletin after oriented assembly of HTHP on a self-assembled monolayer (SAM) of mercaptoundecanoic acid (MUA) on gold electrodes. Cavities which should resemble the shape and size of HTHP were formed by template removal. Rebinding of the target protein sums up the recognition by non-covalent interactions between the protein and the MIP with the electrostatic attraction of the protein by the SAM. HTHP bound to the MIP exhibits quasi-reversible DET which is reflected by a pair of well pronounced redox peaks in the cyclic voltammograms (CVs) with a formal potential of −184.4 ± 13.7 mV vs. Ag/AgCl (1 M KCl) at pH 8.0 and it was able to catalyze the cathodic reduction of peroxide. At saturation the MIP films show a 12-fold higher electroactive surface concentration of HTHP than the non-imprinted polymer (NIP).

26 March 2017 in Chemosensors
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Aysu YarmanAysu Yarman
Aysu Yarman
KJKatharina Janet Jetzschmann
Katharina Janet Jetzschmann
BNBettina Neumann
Bettina Neumann
XZXiaorong Zhang
Xiaorong Zhang
Ulla WollenbergerUlla Wollenberger
Ulla Wollenberger
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
Molecularly imprinted polymers (MIPs) have the potential to complement antibodies in bioanalysis, are more stable under harsh conditions, and are potentially cheaper to produce. However, the affinity and especially the selectivity of MIPs are in general lower than those of their biological pendants. Enzymes are useful tools for the preparation of MIPs for both low and high-molecular weight targets: As a green alternative to the well-established methods of chemical polymerization, enzyme-initiated polymerization has been introduced and the removal of protein templates by proteases has been successfully applied. Furthermore, MIPs have been coupled with enzymes in order to enhance the analytical performance of biomimetic sensors: Enzymes have been used in MIP-sensors as “tracers” for the generation and amplification of the measuring signal. In addition, enzymatic pretreatment of an analyte can extend the analyte spectrum and eliminate interferences.

3 June 2021 in Chemosensors
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XZXiaorong Zhang
Xiaorong Zhang
GCGiorgio Caserta
Giorgio Caserta
Aysu YarmanAysu Yarman
Aysu Yarman
ESEszter Supala
Eszter Supala
TFTadjoung Waffo Armel franklin
Tadjoung Waffo Armel franklin
Frieder W. SchellerFrieder W. Scheller
Frieder W. Scheller
The epitope imprinting approach applies exposed peptides as templates to synthesize Molecularly Imprinted Polymers (MIPs) for the recognition of the parent protein. While generally the template protein binding to such MIPs is considered to occur via the epitope-shaped cavities, unspecific interactions of the analyte with non-imprinted polymer as well as the detection method used may add to the complexity and interpretation of the target rebinding. To get new insights on the effects governing the rebinding of analytes, we electrosynthesized two epitope-imprinted polymers using the N-terminal pentapeptide VHLTP-amide of human hemoglobin (HbA) as the template. MIPs were prepared either by single-step electrosynthesis of scopoletin/pentapeptide mixtures or electropolymerization was performed after chemisorption of the cysteine extended VHLTP peptide. Rebinding of the target peptide and the parent HbA protein to the MIP nanofilms was quantified by square wave voltammetry using a redox probe gating, surface enhanced infrared absorption spectroscopy, and atomic force microscopy. While binding of the pentapeptide shows large influence of the amino acid sequence, all three methods revealed strong non-specific binding of HbA to both polyscopoletin-based MIPs with even higher affinities than the target peptides.