Paul Smith

Dr. Paul Smith


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 August 2021 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
PSPaul Smith
Paul Smith
CLChristian D. Lorenz
Christian D. Lorenz

17 April 2019 in Physical Chemistry Chemical Physics
Verified
Journal Article
Closed access
PDF file
PSPaul Smith
Paul Smith
RZRobert M. Ziolek
Robert M. Ziolek
EGElena Gazzarrini
Elena Gazzarrini
DODylan M. Owen
Dylan M. Owen
CLChristian D. Lorenz
Christian D. Lorenz
All-atom molecular dynamics simulations have been used to investigate the adsorption of low molecular weight hyaluronic acid to lipid membranes.

24 April 2013 in Soft Matter
Verified
Journal Article
Open access
PDF file
FBFranziska Bode
Franziska Bode
MSMarcelo Alves da Silva
Marcelo Alves da Silva
PSPaul Smith
Paul Smith
CLChristian D. Lorenz
Christian D. Lorenz
SMSeth McCullen
Seth McCullen
CDCecile Dreiss
Cecile Dreiss
Physical, chemical and hybrid tilapia fish gelatin hydrogels were investigated by small-angle neutron scattering (SANS), molecular dynamic simulations and their biological effect in cell cultures studied; results from the different experimental techniques were then correlated and linked to the rheological properties of the gels (F. Bode et al., Biomacromolecules, 2011, 12, 3741–3752). Hydrogels were obtained by cross-linking with the microbial enzyme transglutaminase (mTGase) under two conditions: above and below gelatin physical gelation temperature (ca. 23 °C). Hydrogels cross-linked at 37 °C, from the sol-state, are referred to as ‘chemical’ gels (C); hydrogels cross-linked at 21 °C, thus with concurrent physical gelation, are referred to as ‘physical-co-chemical’ gels (PC). The SANS data were appropriately described by a combination of a Lorentzian and a power law model. For physical gels, the correlation length (ξ) obtained from the fits decreased linearly with gelatin concentration, from 42 to 26 Å for 3.5 to 10% w/w gelatin, respectively. Independently of gelation temperature, all physical gels at a given concentration showed a similar correlation length ξ (26 ± 2 Å), with no significant difference with the sol-state (23 ± 2 Å). In both C and PC gels, ξ increased with mTGase concentration over the range studied: 40 to 167 Å for 10 and 40 U mTGase per g gelatin in C gels (after 120 min cross-linking) and 40 to 82 Å for 10 and 40 U mTGase per g gelatin for PC gels. ξ reached a plateau at the highest mTGase concentration studied for both types of gels. In addition, kinetic studies on C gels revealed that ξ increased linearly with time in the first two hours and grew faster with increasing mTGase concentration. ξ values in the PC gels were smaller than in the corresponding C gels. Cell proliferation studies showed that the gels were compatible with cell growth and indicated no statistically relevant dependence on mTGase concentration for C gels. For PC gels, cell proliferation decreased with increases in mTGase concentration, by approximately 80% from 10 to 40 U mTGase per g gelatin. With the exception of the highest mTGase concentration studied, PC gels overall showed a slightly (but statistically significant) higher cell proliferation than the corresponding chemical gels.

4 May 2020 in Small
Verified
Journal Article
Open access
PDF file
ISI. Emilie Steinmark
I. Emilie Steinmark
PCPei‐Hua Chung
Pei‐Hua Chung
RZRobert M. Ziolek
Robert M. Ziolek
BCBethan Cornell
Bethan Cornell
PSPaul Smith
Paul Smith
KSKlaus Suhling
Klaus Suhling
Understanding viscosity in complex environments remains a largely unanswered question despite its importance in determining reaction rates in vivo. Here, time‐resolved fluorescence anisotropy imaging (TR‐FAIM) is combined with fluorescent molecular rotors (FMRs) to simultaneously determine two non‐equivalent viscosity‐related parameters in complex heterogeneous environments. The parameters, FMR rotational correlation time and lifetime, are extracted from fluorescence anisotropy decays, which in heterogeneous environments show dip‐and‐rise behavior due to multiple dye populations. Decays of this kind are found both in artificially constructed adiposomes and in live cell lipid droplet organelles. Molecular dynamics simulations are used to assign each population to nano‐environments within the lipid systems. The less viscous population corresponds to the state showing an average 25° tilt to the lipid membrane normal, and the more viscous population to the state showing an average 55° tilt. This combined experimental and simulation approach enables a comprehensive description of the FMR probe behavior within viscous nano‐environments in complex, biological systems.

14 April 2021 in Macromolecules
Verified
Journal Article
Closed access
RZRobert M. Ziolek
Robert M. Ziolek
PSPaul Smith
Paul Smith
DPDemi L. Pink
Demi L. Pink
CDCecile Dreiss
Cecile Dreiss
CLChristian D. Lorenz
Christian D. Lorenz

22 December 2020 in Journal of Chemical Information and Modeling
Verified
Journal Article
Closed access
FCFlaviu Cipcigan
Flaviu Cipcigan
PSPaul Smith
Paul Smith
JCJason Crain
Jason Crain
AHAnders Hogner
Anders Hogner
LMLeonardo De Maria
Leonardo De Maria
EREkaterina Ratkova
Ekaterina Ratkova