Nitrogen is a critical nutrient for plant growth and productivity, but inefficiencies in its use in agriculture present both economic and environmental challenges. Enhancing nitrogen use efficiency (NUE) is essential for promoting sustainable crop production and mitigating the negative impacts of nitrogen loss, such as water pollution and greenhouse gas emissions. This review discusses various strategies aimed at improving NUE, with a focus on agronomic practices, genetic advancements, and integrated management approaches. Traditional agronomic methods, including split nitrogen application and the use of controlled-release fertilizers, are explored alongside precision agriculture techniques, which enable real-time adjustments to nitrogen application based on crop and soil conditions. Advances in genetics and biotechnology, such as conventional breeding, genetic modification, and genome editing, have contributed to the development of crop varieties with improved nitrogen uptake and assimilation. Additionally, the role of beneficial microbes, including nitrogen-fixing bacteria and mycorrhizal fungi, is highlighted as a natural means of enhancing nitrogen availability and reducing reliance on synthetic fertilizers. The review further emphasizes sustainable practices such as legume-based crop rotations, continuous cover cropping, and organic fertilization, which contribute to soil nitrogen enrichment and overall soil health. By combining these agronomic, genetic, and microbial strategies, a holistic nitrogen management approach can be achieved, maximizing crop yields while minimizing environmental impacts. This integrated strategy supports the development of resilient and sustainable agricultural systems, promoting long-term soil fertility and productivity.

Modern agriculture faces a dual challenge: sustainable crop production and reducing the environmental impacts of excessive chemical fertilizers use, which leads to soil degradation, nutrient leaching and declining microbial diversity. Addressing these issues, biochar, a carbon-rich by product of pyrolysis, has emerged as a promising soil amendment due to its ability to enhance soil health, support nutrient cycling, and contribute to climate mitigation. However, its interactive effects with rhizosphere dynamics and soil enzymatic process, particularly when used with organic fertilizers, remain insufficiently explored. This review compiles current knowledge on the short-term and long-term impacts of biochar, particularly in combination with organic fertilizers, on rhizosphere properties, enzyme activities, and nutrient dynamics. In the short term, biochar improves soil structure, water retention, and microbial activity, while reducing nutrient leaching and increasing enzymatic functions. Over the long term, it facilitates carbon sequestration, stabilizes soil organic matter (SOM), and ensures nutrient availability, thereby promoting sustainable crop production. The synergistic application of biochar with organic amendments, such as compost and crop residues, further enhances soil fertility and ecosystem services. Despite its numerous benefits, the adoption of biochar on a larger scale is hindered by challenges related to cost-effectiveness, production consistency, and logistical constraints in diverse agricultural systems. Addressing knowledge gaps related to optimal feedstock selection, pyrolysis conditions, and application rates is essential for maximizing biochar’s potential. By integrating biochar into sustainable agricultural practices, farmers can enhance soil productivity, reduce environmental impacts, and contribute to climate change mitigation. A strategic and evidence-based implementation of biochar technologies holds promise for achieving long-term sustainability and food security goals.

Global warming poses a significant threat to plant ecosystems and agricultural productivity, primarily through heat stress (HS), which disrupts photosynthesis, respiration, and overall plant metabolism. Epigenetic modifications, including DNA methylation, histone modifications, and RNA modifications, enable plants to dynamically and heritably adjust gene expression in response to environmental stressors. These mechanisms not only help plants survive immediate stress but also confer stress memory, enhancing their resilience to future HS events. This review explores the mechanisms underlying plant thermotolerance, emphasizing the critical role of epigenetic regulation in adapting to HS. It also highlights how DNA methylation modulates stress-responsive genes, histone modifications facilitate transcriptional memory, and RNA modifications influence mRNA stability and translation. Recent advancements in genome editing technologies, such as CRISPR-Cas9, have enabled precise modifications of epigenetic traits, offering new avenues for breeding climate-resilient crops. The integration of these modern tools with traditional breeding methods holds significant promise for developing crops with enhanced thermotolerance. Despite the potential, challenges such as the stability and heritability of epigenetic marks and the complex interplay between different epigenetic modifications need to be addressed. Future research should focus on elucidating these interactions and identifying reliable epigenetic markers for selection. By leveraging the insights gained from epigenetic studies, we can develop innovative breeding strategies to improve crop resilience and ensure sustainable agricultural productivity in the face of global warming. This review underscores the importance of epigenetic regulation in plant adaptation to heat stress and its potential to revolutionize crop breeding, offering a pathway to secure food production and sustainability under changing climatic conditions.

Traditional plant breeding encompasses repetitive crossing and selection based on morphological traits, while phenotypic selection has been complemented by molecular methods in recent decades. Genome editing with techniques like the CRISPR-Cas9 system is still a novel approach that is being used to make direct modifications to nucleotide sequences of crops. In addition to these genetic alterations, an improved understanding of epigenetic variations such as DNA methylation on the phenotype of plants has led to increased opportunities to accelerate crop improvement. DNA methylation is the most widely studied epigenetic mark in plants and other eukaryotes. These epigenetic marks are highly conserved and involved in altering the activities and functions of developmental signals by catalyzing changes in the chromatin structure through methylation and demethylation. Cytosine methylation (5mC) is the most prevalent modification found in DNA. However, recent identification of N6-methyladenosine (6mA) in plants starts to reveal their critical role in plant development. Epigenetic modifications are actively involved in creating the phenotype by controlling essential biological mechanisms. Epigenetic modifications could be heritable and metastable causing variation in epigenetic status between or within species. However, both genetic and heritable epigenetic variation has the potential to drive natural variation. Hence, epigenome editing might help overcome some of the shortcomings of genome editing (such as gene knockout), which can have significant off-target effects and only enables the loss of a gene’s function. In this review, we have discussed the mechanism underlying DNA methylation and demethylation in plants. Methyltransferases and demethylases are involved in catalyzing specific types of modification. We also discuss the potential role of DNA modifications in crop improvement for meeting the requirements of sustainable and green agriculture.

Excessive use of inorganic fertilizers disrupts soil nutrient balance and leads to soil degradation and a decrease in biodiversity. In contrast, bio-fertilizers enhance soil structure and fertility and promote plant growth and sustainable agriculture development. Therefore, this study focused on a rotation system of winter wheat and summer maize and aimed to explore the effects of applying chemical fertilizer (NPK) and bio-fertilizer (BF) in the winter wheat season on the sustainable soil development of current wheat and subsequent maize. Before sowing winter wheat four fertilization treatments were, respectively CK (100% NPK at 750 kg ha⁻¹), A (60% NPK at 450 + 20% BF at 150 kg ha⁻¹), B (60% NPK at 450 + 40% BF at 300 kg ha⁻¹), and C (60% NPK at 450 + 60% BF at 450 kg ha⁻¹), conducted. The results showed that treatment A (60% NPK + 20% BF) replacing the NPK at 300 kg ha⁻¹ with BF at 150 kg ha⁻¹ significantly soil nutrient contents, enzyme activity, and microbial metabolic activity. The study also found a positive correlation between soil parameters (total nitrogen, alkaline nitrogen, available phosphorus, organic matter, urease, and alkaline phosphatase in the winter wheat and maize cropping season). Furthermore, the soil microbial composition showed significant enrichment of Proteobacteria, Acidobacteria, Actinobacteria, and Firmicutes, and variations among treatments. Moreover, the application of biofertilizer enhanced the diversity of soil fungi species, particularly during the winter wheat season. This study highlights the importance of integrating biofertilizers with NPK fertilizer for agricultural system conversion and promoting agricultural production and sustainability.

Phosphatidic acid (PA) is an important signal molecule in various biological processes including osmotic stress. Lysophosphatidic acid acyltransferase (LPAT) acylates the sn-2 position of the glycerol backbone of lysophosphatidic acid (LPA) to produce PA. The role of LPAT2 and its PA in osmotic stress response remains elusive in plants. Here we showed that LPAT2-derived PA is important for salt and drought stress tolerance in rice. Rice LPAT2 was localized to the endoplasmic reticulum (ER) to catalyze the PA synthesis. The LPAT2 transcript was induced by osmotic stress such as high salinity and water deficit. To reveal its role in osmotic stress response, an LPAT2 knockdown mutant, designated lpat2, was isolated from rice, which contained a reduced PA level relative to wild type (WT) plants under salt stress and water deficit. The lpat2 mutant was more susceptible to osmotic stress and less sensitive to abscisic acid (ABA) than that of WT, which was recovered by either PA supplementation or genetic LPAT2 complementation. Moreover, suppressed LPAT2 also led to a large number of differentially expressed genes (DEGs) involved in diverse processes, particularly, in ABA response, kinase signaling, and ion homeostasis in response to salt stress. Together, LPAT2-produced PA plays a positive role in osmotic tolerance through mediating ABA response, which leads to transcriptional alteration of genes related to ABA response, protein kinase signaling, and ion homeostasis.