Diego Heras-Márquez

Dr. Diego Heras-Márquez

Complutense University of Madrid, Madrid, Spain
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 October 2023 in Nature Catalysis
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Journal Article
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ARAna Robles-Martín
Ana Robles-Martín
RARafael Amigot
Rafael Amigot
LFLaura Fernandez-Lopez
Laura Fernandez-Lopez
Jose Luis GonzálezJose Luis González
Jose Luis González
SRSergi Rodà
Sergi Rodà
VGVictor Guallar
Victor Guallar
The identification or design of biocatalysts to mitigate the accumulation of plastics, including sub-micro- and nano-sized polyethylene terephthalate (nPET), is becoming a global challenge. Here we computationally incorporated two hydrolytic active sites with geometries similar to that of Idionella sakaiensis PET hydrolase, to fragaceatoxin C (FraC), a membrane pore-forming protein. FraCm1/m2 could be assembled into octameric nanopores (7.0 nm high × 1.6–6.0 nm entry), which deconstructed (40 °C, pH 7.0) nPET from GoodFellow, commodities and plastic bottles. FraCm1 and FraCm2 degrade nPET by endo- and exo-type chain scission. While FraCm1 produces bis(2-hydroxyethyl) terephthalate as the main product, FraCm2 yields a high diversity of oligomers and terephthalic acid. Mechanistic and biochemical differences with benchmark PET hydrolases, along with pore and nPET dynamics, suggest that these pore-forming protein catalytic nanoreactors do not deconstruct macro-PET but are promising in nanotechnology for filtering, capturing and breaking down nPET, for example, in wastewater treatment plants.

26 September 2025 in Science Advances
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Journal Article
Open access
RARocío Arranz
Rocío Arranz
CSCésar Santiago
César Santiago
SMSimonas Masiulis
Simonas Masiulis
Esperanza Rivera-de-TorreEsperanza Rivera-de-Torre
Esperanza Rivera-de-Torre
Juan Palacios-OrtegaJuan Palacios-Ortega
Juan Palacios-Ortega
JMJaime Martín-Benito
Jaime Martín-Benito
Pore-forming proteins exemplify the transformative potential of biological molecules. Produced as soluble monomers, they assemble into multimeric membrane-inserted complexes in response to specific membrane environments. Actinoporins, a class of pore-forming proteins from sea anemones, target membranes to kill cells. Here, we report cryogenic electron microscopy structures of two actinoporins, fragaceatoxin C and sticholysin II, reconstituted in lipid membranes. The structures reveal an ordered arrangement of dozens of lipid molecules that form an integral part of the pore architecture. We also captured distinct oligomeric intermediates, arc-shaped assemblies with monomers in transitional conformations, representing key snapshots along the pore formation pathway. These data provide direct structural evidence for a stepwise mechanism in which monomers sequentially bind the membrane and undergo conformational changes that drive pore assembly and membrane disruption. Our findings reveal how these proteins reshape membranes and offer mechanistic insights into their cytolytic activity. This work broadens our understanding of pore-forming proteins, which are gaining increasing relevance in diverse biotechnological applications.

Verified
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Juan Palacios-OrtegaJuan Palacios-Ortega
Juan Palacios-Ortega
DHDiego Heras-Márquez
Diego Heras-Márquez
RARafael Amigot
Rafael Amigot
CMCarmen García Montoya
Carmen García Montoya
CTCarlos Torrijos
Carlos Torrijos
ÁMÁlvaro Martínez-del-Pozo
Álvaro Martínez-del-Pozo
Spanish or Spanish-speaking scientists represent a remarkably populated group within the scientific community studying pore-forming proteins. Some of these scientists, ourselves included, focus on the study of actinoporins, a fascinating group of metamorphic pore-forming proteins produced within the venom of several sea anemones. These toxic proteins can spontaneously transit from a water-soluble fold to an integral membrane ensemble because they specifically recognize sphingomyelin in the membrane. Once they bind to the bilayer, they subsequently oligomerize into a pore that triggers cell-death by osmotic shock. In addition to sphingomyelin, some actinoporins are especially sensible to some other membrane components such as cholesterol. Our group from Universidad Complutense of Madrid has focused greatly on the role played by sterols in this water–membrane transition, a question which still remains only partially solved and constitutes the main core of the article below.

23 November 2023 in Archives of Biochemistry and Biophysics
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Journal Article
Closed access
CMCarmen García Montoya
Carmen García Montoya
Sara García-LinaresSara García-Linares
Sara García-Linares
DHDiego Heras-Márquez
Diego Heras-Márquez
MMManca Majnik
Manca Majnik
DLDiego Laxalde-Fernández
Diego Laxalde-Fernández
Juan Palacios-OrtegaJuan Palacios-Ortega
Juan Palacios-Ortega

27 June 2024 in bioRxiv
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RARocío Arranz
Rocío Arranz
CSCésar Santiago
César Santiago
SMSimonas Masiulis
Simonas Masiulis
Esperanza Rivera-de-TorreEsperanza Rivera-de-Torre
Esperanza Rivera-de-Torre
Juan Palacios-OrtegaJuan Palacios-Ortega
Juan Palacios-Ortega
JMJaime Martín-Benito
Jaime Martín-Benito
Pore-forming proteins exemplify the transformative potential of biological molecules. Initially produced in a monomeric, water-soluble form, they spontaneously assemble into multimeric integral membrane proteins in the presence of suitable target lipids. Their functions include roles in apoptosis, cell signaling, immunity, as well as attack and defense systems between different organisms. This latter group encompasses actinoporins, a family of pore-forming toxins from sea anemones that kill target cells by perforating their plasma membrane. Here, we have determined the structures of two such toxins, fragaceatoxin C and sticholysin II, in a membrane environment using cryogenic electron microscopy. The structures reveal how dozens of lipid molecules interact in an orderly manner, forming an intrinsic part of the pore. We have also isolated different pore-forming intermediates, where only a fraction of the constituent monomers is incorporated, exhibiting non-closed, arc-shaped structures. Based on these structures we propose a mechanism of action where the sequential assembly of toxin monomers onto the membrane, accompanied by conformational changes, triggers pore formation and membrane perforation. Our results contribute to a better understanding of the transforming capacity of these pore-forming proteins, which are becoming increasingly important for their diverse biotechnological applications.

15 January 2025 in bioRxiv
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JDJaime L. Díaz-Varela
Jaime L. Díaz-Varela
VSVittoria Sabia
Vittoria Sabia
DHDiego Heras-Márquez
Diego Heras-Márquez
DLDiego Laxalde-Fernández
Diego Laxalde-Fernández
ÁMÁlvaro Martínez-del-Pozo
Álvaro Martínez-del-Pozo
Sara García-LinaresSara García-Linares
Sara García-Linares
Staphylococcus aureus is a human opportunistic pathogen capable of causing multiple infections in both humans and animals. It secretes a group of exotoxins, known as hemolysins, which are released to enhance its pathogenicity. All of them exhibit cytolytic activity on a variety of host cell types, but α-hemolysin stands out for being the most thoroughly studied variant. In this work, we show the production and purification of S. aureus α-hemolysin following a straightforward protocol and in sufficient quantity to consider it as a potential procedure for future biotechnological approaches. Functional and structural characterization has indeed revealed that the protein is fully functional, confirming the key role of cholesterol in the necessary protein-lipid interaction. Furthermore, it has also been shown that the purified toxin can be assembled into single-particle individual pores within soluble lipid platforms in the form of cholesterol-containing nanodiscs.