PEDRO ROMON-OCHOA

Dr. PEDRO ROMON-OCHOA

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 November 2022 in Viruses
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Journal Article
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PRPEDRO ROMON-OCHOA
PEDRO ROMON-OCHOA
JFJack Forster
Jack Forster
RCRuth Chitty
Ruth Chitty
CGCaroline Gorton
Caroline Gorton
ALAlex Lewis
Alex Lewis
ASAna Perez Sierra
Ana Perez Sierra
Biological control of Cryphonectria parasitica fungus, causal agent of chestnut blight, by virus infection (hypovirulence) has been shown to be an effective control strategy against chestnut blight in Europe and some parts of North America. The most studied mycovirus is the Cryphonectria hypovirus 1 (CHV-1) type species of the Hypoviridae family. To efficiently provide biocontrol, the virus must be able to induce hypovirulence in its fungal host in chestnut trees. Here, two different CHV-1 subtype I virus strains (E-5 and L-18), gained by transmissions, were tested for their hypovirulence induction, biocontrol potential, and transmission between vegetatively compatible (VCG) and incompatible fungal isolate groups in sweet chestnut seedlings and branches. Both strains of CHV-1 showed great biocontrol potential and could protect trees by efficiently transmitting CHV-1 by hyphal anastomosis between fungal isolates of the same VCG and converting virulent to hypovirulent cankers. The hypovirulent effect was positively correlated with the virus concentration, tested by four different reverse-transcription PCRs, two end-point and two real-time methods, one of which represents a newly developed real-time PCR for the detection and quantification of CHV-1.

26 December 2021 in Plant Pathology
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Journal Article
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PRPEDRO ROMON-OCHOA
PEDRO ROMON-OCHOA
JOJelena Kranjec Orlović
Jelena Kranjec Orlović
CGCaroline Gorton
Caroline Gorton
ALAlex Lewis
Alex Lewis
SLSietse van der Linde
Sietse van der Linde
ASAna Perez Sierra
Ana Perez Sierra

27 May 2023 in Viruses
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Journal Article
Open access
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PRPEDRO ROMON-OCHOA
PEDRO ROMON-OCHOA
OSOlivia Smith
Olivia Smith
ALAlex Lewis
Alex Lewis
QKQuirin Kupper
Quirin Kupper
WSWajeeha Shamsi
Wajeeha Shamsi
LWLisa Iris Ward
Lisa Iris Ward
Biological control of Cryphonectria parasitica fungus, the causal agent of chestnut blight, by virus infection (hypovirulence) is an effective control strategy against chestnut blight in Europe and some parts of North America. The most studied mycovirus is the Cryphonectria hypovirus 1 (CHV1) type species of the Hypoviridae family. In this study, the CHV1 virus was studied within some highly infected British isolates of Cryphonectria parasitica, gained in the past through co-culture transmissions. The effects of six temperatures (5–30 °C, in 5 °C steps) on six infected isolates (three with viral strain E-5, and other three with viral strain L-18) and their respective negative non-infected controls, three isogenic virulent fungal isolates, were examined. Experiments were performed with the nine isolate types with three replicates on potato dextrose agar (PDA) with cellophane sheets per isolate and temperature. A recently developed rapid, specific, quantitative reverse transcription PCR (RT-qPCR) screening method was used. This enabled quantifying the concentration (nanograms per microliter or copy numbers) of the virus within each isolate repetition. The presence of the virus had a significant negative effect between 20 and 25 °C on the C. parasitica growth rate, which was anyway highly influenced by and positively correlated with the temperature. The temperature clearly determined the virus accumulation and its recovery from cold or heat, and the virus optimum temperature was estimated at 15–25 °C.

11 October 2019 in Pest Management Science
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Journal Article
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PRPEDRO ROMON-OCHOA
PEDRO ROMON-OCHOA
CGCaroline Gorton
Caroline Gorton
ALAlex Lewis
Alex Lewis
SLSietse van der Linde
Sietse van der Linde
JWJoan Webber
Joan Webber
APAna Pérez‐Sierra
Ana Pérez‐Sierra

26 July 2024 in Viruses
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Journal Article
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Ali ÇELİKAli ÇELİK
Ali ÇELİK
DÇDeniz Çakar
Deniz Çakar
SDSibel Derviş
Sibel Derviş
Ali Ferhan MorcaAli Ferhan Morca
Ali Ferhan Morca
SŞSeçil Akıllı Şimşek
Seçil Akıllı Şimşek
Göksel ÖzerGöksel Özer
Göksel Özer
Some mycoviruses can be considered as effective biocontrol agents, mitigating the impact of phytopathogenic fungi and consequently reducing disease outbreaks while promoting plant health. Cryphonectria parasitica, the causal agent of chestnut blight and a highly destructive pathogen, experienced a notable decrease in its virulence with the identification of cryphonectria hypovirus 1 (CHV1), a naturally occurring biocontrol agent. In this study, two innovative diagnostic protocols designed for the accurate and efficient detection of CHV1 are introduced. The ORF A and ORF B regions of CHV1 are targeted by these techniques, which employ colorimetric loop-mediated isothermal amplification (LAMP) with 2 Colorimetric LAMP Master Mix and real-time quantitative PCR (qPCR) with SYBR Green chemistry, respectively. The LAMP assay presents a discernible color transition, changing from pink to yellow after a 35 min incubation period. Comparative analysis, when assessed against two established reverse transcription-PCR (RT-PCR) techniques, reveals a significant enhancement in sensitivity for both the LAMP approach, which offers a tenfold increase, and the qPCR method, which showcases a remarkable 100-fold sensitivity improvement. Throughout the comparison phase, it was evident that the RT-PCR, LAMP, and qPCR procedures displayed superior performance compared to the Bavendamm test, relying on phenol oxidase activity, effectively distinguishing hypovirulent strains. Consequently, this study introduces two pioneer diagnostic assays for highly sensitive CHV1 detection, representing a substantial advancement in the realm of CHV1 surveillance techniques. These methodologies hold significant promise for enhancing research endeavors in the domain of the biological control of C. parasitica.

20 October 2023 in Journal of Fungi
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Journal Article
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PRPEDRO ROMON-OCHOA
PEDRO ROMON-OCHOA
PSPankajini Samal
Pankajini Samal
CGCaroline Gorton
Caroline Gorton
ALAlex Lewis
Alex Lewis
RCRuth Chitty
Ruth Chitty
LWLisa Iris Ward
Lisa Iris Ward
In England, Cryphonectria parasitica was detected for the first time in 2011 in a nursery and in 2016 in the wider environment. Surveys between 2017 and 2020 identified the disease at different sites in Berkshire, Buckinghamshire, Cornwall, Derbyshire, Devon, Dorset, London, West Sussex, and the island of Jersey, while the present study comprises the results of the 2020–2023 survey with findings in Derbyshire, Devon, Kent, Nottinghamshire, Herefordshire, Leicestershire, London, West Sussex, and the islands of Jersey and Guernsey. A total of 226 suspected samples were collected from 72 surveyed sites, as far north as Edinburgh and as far west as Plymouth (both of which were negative), and 112 samples tested positive by real-time PCR and isolation from 35 sites. The 112 isolates were tested for the vegetative compatibility group (VCG), mating type, and Cryphonectria hypovirus 1 (CHV1). Twelve VCGs were identified, with two of them (EU-5 and EU-22) being the first records in the UK. Both mating types were present (37% MAT-1 and 63% MAT-2), but only one mating type was present per site and VCG, and perithecia were never observed. Cryphonectria hypovirus 1 (CHV1), consistently subtype-I haplotype E-5, was detected in three isolates at a low concentration (5.9, 21.1, and 33.0 ng/µL) from locations in London, Nottinghamshire, and Devon.