Diving into Deep Water: The Deepwater Horizon oil spill in the Gulf of Mexico was one of the largest oil spills on record. Its setting at the bottom of the sea floor posed an unanticipated risk as substantial amounts of hydrocarbons leaked into the deepwater column. Three separate cruises identified and sampled deep underwater hydrocarbon plumes that existed in May and June, 2010—before the well head was ultimately sealed. Camilli et al. (p. 201 ; published online 19 August) used an automated underwater vehicle to assess the dimensions of a stabilized, diffuse underwater plume of oil that was 22 miles long and estimated the daily quantity of oil released from the well, based on the concentration and dimensions of the plume. Hazen et al. (p. 204 ; published online 26 August) also observed an underwater plume at the same depth and found that hydrocarbon-degrading bacteria were enriched in the plume and were breaking down some parts of the oil. Finally, Valentine et al. (p. 208 ; published online 16 September) found that natural gas, including propane and ethane, were also present in hydrocarbon plumes. These gases were broken down quickly by bacteria, but primed the system for biodegradation of larger hydrocarbons, including those comprising the leaking crude oil. Differences were observed in dissolved oxygen levels in the plumes (a proxy for bacterial respiration), which may reflect differences in the location of sampling or the aging of the plumes.

Summary: The Deepwater Horizon oil spill resulted in a massive influx of hydrocarbons into the Gulf of Mexico (the Gulf). To better understand the fate of the oil, we enriched and isolated indigenous hydrocarbon‐degrading bacteria from deep, uncontaminated waters from the Gulf with oil (Macondo MC252) and dispersant used during the spill (COREXIT 9500). During 20 days of incubation at 5°C, CO ₂ evolution, hydrocarbon concentrations and the microbial community composition were determined. Approximately 60% to 25% of the dissolved oil with or without COREXIT, respectively, was degraded, in addition to some hydrocarbons in the COREXIT. FeCl ₂ addition initially increased respiration rates, but not the total amount of hydrocarbons degraded. 16S rRNA gene sequencing revealed a succession in the microbial community over time, with an increase in abundance of Colwellia and Oceanospirillales during the incubations. Flocs formed during incubations with oil and/or COREXIT in the absence of FeCl ₂ . Synchrotron radiation‐based Fourier transform infrared (SR‐FTIR) spectromicroscopy revealed that the flocs were comprised of oil, carbohydrates and biomass. Colwellia were the dominant bacteria in the flocs. Colwellia sp. strain RC25 was isolated from one of the enrichments and confirmed to rapidly degrade high amounts (approximately 75%) of the MC252 oil at 5°C. Together these data highlight several features that provide Colwellia with the capacity to degrade oil in cold, deep marine habitats, including aggregation together with oil droplets into flocs and hydrocarbon degradation ability.

Significance: Millions of abandoned oil and gas wells exist across the United States and around the world. Our study analyzes historical and new field datasets to quantify the number of abandoned wells in Pennsylvania, individual and cumulative methane emissions, and the attributes that help explain these emissions. We show that ( i ) methane emissions from abandoned wells persist over multiple years and likely decades, ( ii ) high emitters appear to be unplugged gas wells and plugged/vented gas wells, as required in coal areas, and ( iii ) the number of abandoned wells may be as high as 750,000 in Pennsylvania alone. Knowing the attributes of high emitters will lead to cost-effective mitigation strategies that target high methane-emitting wells.

Significance: We have studied the functionality of an incomplete acetyl-CoA “Wood–Ljungdahl” pathway in a strictly organohalide-respiring bacterium, Dehalococcoides mccartyi . We found that in addition to its ability to incorporate exogenous formate, this pathway cleaves acetyl-CoA to generate methyl-tetrahydrofolate for methionine biosynthesis, serving as a unique substitute of the missing methylene-tetrahydrofolate reductase function. We also found that accumulation of carbon monoxide (CO), an obligate by-product from acetyl-CoA cleavage, inhibits D. mccartyi axenic cultures, but can be ameliorated by the presence of a CO-oxidizing organism, resulting in an unusual syntrophic association. The understanding of the products and biosynthetic functions of this incomplete Wood–Ljungdahl pathway improves our knowledge of alternate central metabolic strategies used by environmental microorganisms.