Alzheimer’s disease (AD) is the most frequent incurable neurodegenerative disease, a general term for memory loss and other cognitive abilities. Early detection of AD can help with proper treatment and prevent brain tissue damage. Traditional medical tests are time consuming, fail to recognize early signs and lack of diagnosis sensitivity and specificity. To achieve promising prediction accuracy, the best predictive machine learning model is selected based on initial pre-processing step followed by vital attributes selection and performance evaluation for five proposed supervised machine learning algorithms. In the pre-processing, all the missing values have been removed since the overall percentage only covered 5.63%. Boruta algorithm as feature selection method resulted Atlas Scaling Factor, Estimated Total Intracranial Volume, Normalized Whole-brain Volume, Mini-Mental State Examination and Clinical Dementia Rating must be included as primary features. With Boruta algorithm, it has been shown that Random Forest Grid Search Cross Validation (RF GSCV) outperformed with 94.39% of accuracy, 88.24% sensitivity, 100.00% specificity and 94.44% AUC among other 12 models that includes conventional and fine-tuned models even for the small OASIS-2 longitudinal MRI dataset. Finally, our developed Graphical User Interface (GUI) prediction tool was evaluated through prediction over OASIS-1 cross-sectional MRI dataset containing 216 samples of imaging sessions that have been pre-processed. Prediction results were closed with the dementia status provided in OASIS cross-sectional data fact sheet.

Autism Spectrum Disorder (ASD) was characterized by delay in social interactions development, repetitive behaviors and narrow interest, which usually diagnosed with standard diagnostic tools such as Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADIR-R). Previous work has implemented machine-learning methods for the classification of ASD, however they used different types of dataset such as brain images for MRI and EEG, risk genes in genetic profiles and behavior evaluation based on ADOS and ADI-R. Here a trial on using Autism Spectrum Questions (AQ) to build models that have higher potential to classify ASD was developed. In this research, Chi-square and Least Absolute Shrinkage and Selection Operator (LASSO) have been selected as feature selection methods to select the most important features for 3 supervised machine learning algorithms, which are Random Forest, Logistic Regression and K-Nearest Neighbors with K-fold cross validation. The performance was evaluated in which results Logistic Regression scored the highest accuracy with 97.541% using model with 13 selected features based on Chi-square selection method.

Secondary metabolites are bioactive substances with diverse chemical structures. Depending on the ecological environment within which they are living, higher plants use different combinations of secondary metabolites for adaptation (e.g., defense against attacks by herbivores or pathogenic microbes). This suggests that the similarity in metabolite content is applicable to assess phylogenic similarity of higher plants. However, such a chemical taxonomic approach has limitations of incomplete metabolomics data. We propose an approach for successfully classifying 216 plants based on their known incomplete metabolite content. Structurally similar metabolites have been clustered using the network clustering algorithm DPClus. Plants have been represented as binary vectors, implying relations with structurally similar metabolite groups, and classified using Ward’s method of hierarchical clustering. Despite incomplete data, the resulting plant clusters are consistent with the known evolutional relations of plants. This finding reveals the significance of metabolite content as a taxonomic marker. We also discuss the predictive power of metabolite content in exploring nutritional and medicinal properties in plants. As a byproduct of our analysis, we could predict some currently unknown species-metabolite relations.

Effective management of patients with diabetic foot infection is a crucial concern. A delay in prescribing appropriate antimicrobial agent can lead to amputation or life threatening complications. Thus, this electronic nose (e-nose) technique will provide a diagnostic tool that will allow for rapid and accurate identification of a pathogen. This study investigates the performance of e-nose technique performing direct measurement of static headspace with algorithm and data interpretations which was validated by Headspace SPME-GC-MS, to determine the causative bacteria responsible for diabetic foot infection. The study was proposed to complement the wound swabbing method for bacterial culture and to serve as a rapid screening tool for bacteria species identification. The investigation focused on both single and poly microbial subjected to different agar media cultures. A multi-class technique was applied including statistical approaches such as Support Vector Machine (SVM), K Nearest Neighbor (KNN), Linear Discriminant Analysis (LDA) as well as neural networks called Probability Neural Network (PNN). Most of classifiers successfully identified poly and single microbial species with up to 90% accuracy. The results obtained from this study showed that the e-nose was able to identify and differentiate between poly and single microbial species comparable to the conventional clinical technique. It also indicates that even though poly and single bacterial species in different agar solution emit different headspace volatiles, they can still be discriminated and identified using multivariate techniques.

Volatile organic compounds (VOCs) are small molecules that exhibit high vapor pressure under ambient conditions and have low boiling points. Although VOCs contribute only a small proportion of the total metabolites produced by living organisms, they play an important role in chemical ecology specifically in the biological interactions between organisms and ecosystems. VOCs are also important in the health care field as they are presently used as a biomarker to detect various human diseases. Information on VOCs is scattered in the literature until now; however, there is still no available database describing VOCs and their biological activities. To attain this purpose, we have developed KNApSAcK Metabolite Ecology Database, which contains the information on the relationships between VOCs and their emitting organisms. The KNApSAcK Metabolite Ecology is also linked with the KNApSAcK Core and KNApSAcK Metabolite Activity Database to provide further information on the metabolites and their biological activities. The VOC database can be accessed online.

The Effect of Temporal EEG Signals While Listening to Quran Recitation