Sakiko Okumoto

Sakiko Okumoto


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 May 2022 in Plant Physiology
Verified
Journal Article
Closed access
PDF file
XZXiaomu Zhang
Xiaomu Zhang
PKPramod Khadka
Pramod Khadka
PPPatryk Puchalski
Patryk Puchalski
JLJoss D Leehan
Joss D Leehan
FRFranco Rubén Rossi
Franco Rubén Rossi
CDCristian H Danna
Cristian H Danna
Plants live under the constant challenge of microbes that probe the environment in search of potential hosts. Plant cells perceive microbe-associated molecular patterns (MAMPs) from incoming microbes and activate defense responses that suppress attempted infections. Despite the substantial progress made in understanding MAMP-triggered signaling pathways, the downstream mechanisms that suppress bacterial growth and disease remain poorly understood. Here, we uncover how MAMP perception in Arabidopsis (Arabidopsis thaliana) elicits dynamic changes in extracellular concentrations of free L-amino acids (AA). Within the first 3 h of MAMP perception, a fast and transient inhibition of AA uptake produces a transient increase in extracellular AA concentrations. Within 4 and 12 h of MAMP perception, a sustained enhanced uptake activity decreases the extracellular concentrations of AA. Gene expression analysis showed that salicylic acid-mediated signaling contributes to inducing the expression of AA/H+ symporters responsible for the MAMP-induced enhanced uptake. A screening of loss-of-function mutants identified the AA/H+ symporter lysin/histidine transporter-1 as an important contributor to MAMP-induced enhanced uptake of AA. Infection assays in lht1-1 seedlings revealed that high concentrations of extracellular AA promote bacterial growth in the absence of induced defense elicitation but contribute to suppressing bacterial growth upon MAMP perception. Overall, the data presented in this study reveal a mechanistic connection between MAMP-induced plant defense and suppression of bacterial growth through the modulation of AA transport activity.

16 November 2021 in The Plant Journal
Verified
Journal Article
Open access
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VCVanessa Castro-Rodríguez
Vanessa Castro-Rodríguez
TKThomas J. Kleist
Thomas J. Kleist
NGNicoline M. Gappel
Nicoline M. Gappel
FAFatiha Atanjaoui
Fatiha Atanjaoui
SOSakiko Okumoto
Sakiko Okumoto
Michael M. WudickMichael M. Wudick
Michael M. Wudick
SUMMARY: Plants use electrical and chemical signals for systemic communication. Herbivory, for instance, appears to trigger local apoplasmic glutamate accumulation, systemic electrical signals, and calcium waves that travel to report insect damage to neighboring leaves and initiate defense. To monitor extra‐ and intracellular glutamate concentrations in plants, we generated Arabidopsis lines expressing genetically encoded fluorescent glutamate sensors. In contrast to cytosolically localized sensors, extracellularly displayed variants inhibited plant growth and proper development. Phenotypic analyses of high‐affinity display sensor lines revealed that root meristem development, particularly the quiescent center, number of lateral roots, vegetative growth, and floral architecture were impacted. Notably, the severity of the phenotypes was positively correlated with the affinity of the display sensors, intimating that their ability to sequester glutamate at the surface of the plasma membrane was responsible for the defects. Root growth defects were suppressed by supplementing culture media with low levels of glutamate. Together, the data indicate that sequestration of glutamate at the cell surface either disrupts the supply of glutamate to meristematic cells and/or impairs localized glutamatergic signaling important for developmental processes.

1 July 2025 in The Plant Cell
Verified
Journal Article
Open access
JOJonathan Ojeda-Rivera
Jonathan Ojeda-Rivera
ABAllison C Barnes
Allison C Barnes
EAElizabeth A. Ainsworth
Elizabeth A. Ainsworth
RARuthie Angelovici
Ruthie Angelovici
BBBruno Basso
Bruno Basso
EBEdward S Buckler
Edward S Buckler
Maize (Zea mays L.) is the world's most productive grain crop and a cornerstone of global food supply. However, in temperate agricultural systems, maize exhibits 2 key anomalies. First, as a tropical species, maize cannot be planted in the cold conditions of early spring when light and natural soil nitrogen are available, resulting in a shorter growing season and creating a seasonal mismatch between nitrogen accessibility and demand. Second, maize kernel protein is a major nitrogen sink, driving fertilizer demand because of the scale of cultivation. This inefficient mismatch stems from modern maize's uses and the modest nutritional value of storage proteins. To address these anomalies, we established the Circular Economy that Reimagines Corn Agriculture initiative. Our vision requires advances in 3 research areas: (ⅰ) developing cold and frost tolerance during germination and early growth to enable the use of spring nitrogen and light resources; (ⅱ) reducing nitrogen allocation to grain by reducing low-quality storage proteins and developing alternative nitrogen sinks; and (ⅲ) stabilizing soil nitrogen by enhancing biological nitrification inhibition. We present blueprints for a nitrogen-efficient, cold-tolerant maize designed to utilize the full growing season, enabling farmers in temperate regions to fully leverage maize's C4 photosynthesis, reduce fertilizer inputs, increase yields, and minimize environmental impact.

16 May 2023 in The Plant Journal
Verified
Journal Article
Open access
BMBal Maharjan
Bal Maharjan
SVStanislav Vitha
Stanislav Vitha
SOSakiko Okumoto
Sakiko Okumoto
SUMMARY: Ammonium in the soil is converted into nitrate by nitrifying bacteria or archaea. While nitrate is readily available for plants, it is prone to leaching and contributes to eutrophication. In addition, when the soil conditions become anaerobic, nitrate can be reduced to nitrous oxide, a powerful greenhouse gas. Therefore, slowing nitrification in agricultural soil offers some benefits by reducing nitrogen loss and decreasing water and air pollution. Since nitrogen is a limiting nutrient for most ecological niches, many plants have evolved specialized compounds that reduce nitrification. One such compound, sorgoleone, which is secreted from the root hair of sorghum, has been relatively well studied due to its allelopathic function, with most enzymes involved in its biosynthesis elucidated. However, the secretion mechanisms remain unknown. Previous studies reported numerous lipidic vesicles in the sorghum root hair and speculated that they are involved in sorgoleone storage or secretion, but their roles remain unclear. Also, the subcellular organelles that are involved in sorgoleone synthesis have not been identified. In the present study, we found that the expression of sorgoleone biosynthesis enzymes is induced in a specific root zone, indicating that the secretion is developmentally regulated. The accumulation of internal vesicles preceded the peak of sorgoleone biosynthesis and secretion, indicating that the vesicles play a role in precursor storage rather than secretion. Moreover, our data suggest that enzymes that catalyze the first three steps, SbDES2, SbDES3, and SbARS1, interact with each other to form a multi‐enzyme complex on the endoplasmic reticulum surface.

14 May 2025 in Crop Science
Verified
Journal Article
Open access
SOSakiko Okumoto
Sakiko Okumoto
BMBal Maharjan
Bal Maharjan
SNSruthi Narayanan
Sruthi Narayanan
JXJing Xi
Jing Xi
SBScott R Baerson
Scott R Baerson
GSGuntur V Subbarao
Guntur V Subbarao
Sorghum is the third most important food crop, grown on nearly 40 million ha globally, and is known for its resilience under unfavorable conditions. Sorghum is reported to have a strong biological nitrification inhibition (BNI) capacity in root systems, a plant function that suppresses soil nitrifier activity, which in turn prevents the nitrogen (N) loss by reducing nitrous oxide (N2O), nitric oxide (NO) emission, and nitrate (NO3−) leaching into water bodies. Sorgoleone, a major hydrophobic phytochemical released from sorghum roots, provides a significant part of BNI function in sorghum. The function of sorgoleone in suppressing nitrifying bacteria in pure cultures has been established. In addition, sorgoleone suppresses transformation of ammonium (NH3) to NO3− and N2O emissions from soils. Therefore, introducing high‐sorgoleone phenotype into elite sorghum hybrids can increase nitrogen use efficiency while decreasing the environmental footprint of sorghum production systems. In recent years, significant progress has been made in identifying the mechanisms of sorgoleone production and secretion. Moreover, studies using both wild accessions and elite breeding materials reported significant genetic variation for sorgoleone secretion, and sorgoleone secretion was found to be highly heritable, making it a good target for breeding. This review distills the current understanding of sorgoleone release in relation to BNI function and opportunities to exploit this trait. Also, we provide our assessment for genetic interventions of Sorgoleone biosynthesis and secretion pathways to enhance BNI capacity in sorghum. High‐BNI sorghum hybrids can be an important component of low‐nitrifying, low‐N2O‐emitting agricultural production systems that are eco‐friendly, productive, and sustainable.

19 September 2024 in Crop Science
Verified
Journal Article
Open access
BMBal Maharjan
Bal Maharjan
FLFabian Leon
Fabian Leon
WRWilliam Rooney
William Rooney
SOSakiko Okumoto
Sakiko Okumoto
Sorghum (Sorghum bicolor) has the ability to inhibit the conversion of ammonium to nitrate (biological nitrification inhibition [BNI]) in the rhizosphere, which in turn prevents the loss of bioavailable nitrogen. Sorgoleone is a lipidic compound secreted by sorghum root hairs and is responsible for roughly 60% of BNI activity in sorghum. Previous studies revealed variation in sorgoleone secretion among different accessions and cultivars. However, little information is available regarding the genetic inheritance of sorgoleone secretion in sorghum. To increase sorgoleone through breeding, an understanding of the inheritance of this trait is required. In this study, 21 seed parents and 21 pollinator parents from the Texas AgriLife Research sorghum breeding program were crossed in an incomplete factorial design to generate 158 hybrids, and sorgoleone secretion from both hybrids and inbreds was quantified. There was significant variation in sorgoleone secretion across hybrids and inbred lines, and small but significant mid‐parent heterosis was observed in the hybrids. A linear mixed model analysis to calculate general and specific combining abilities for inbred parents and hybrids detected significant genetic effects for the male, the female, and male × female interactions (p < 0.001). Broad‐sense heritability was high ( = 0.87), while narrow‐sense heritability for the seed parents and pollinator parents was moderate (= 0.35 and = 0.39, respectively). These results indicate that sorgoleone exudation is primarily driven by additive genetic effects, but dominance effects are important for optimum production. These findings indicate that selection for increased sorgoleone root exudation among elite, adapted grain sorghum hybrids and inbred should be effective.