Sameer Hassan

Dr. Sameer Hassan

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
13 January 2020 in BMC Plant Biology
Verified
Journal Article
Open access
PDF file
JLJohanna Lethin
Johanna Lethin
SSShahriar S. M. Shakil
Shahriar S. M. Shakil
SHSameer Hassan
Sameer Hassan
NSNick Sirijovski
Nick Sirijovski
MTMats Töpel
Mats Töpel
HAHenrik Aronsson
Henrik Aronsson
Background: Triticum aestivum (wheat) is one of the world’s oldest crops and has been used for >8000 years as a food crop in North Africa, West Asia and Europe. Today, wheat is one of the most important sources of grain for humans, and is cultivated on greater areas of land than any other crop. As the human population increases and soil salinity becomes more prevalent, there is increased pressure on wheat breeders to develop salt-tolerant varieties in order to meet growing demands for yield and grain quality. Here we developed a mutant wheat population using the moderately salt-tolerant Bangladeshi variety BARI Gom-25, with the primary goal of further increasing salt tolerance. Results: After titrating the optimal ethyl methanesulfonate (EMS) concentration, ca 30,000 seeds were treated with 1% EMS, and 1676 lines, all originating from single seeds, survived through the first four generations. Most mutagenized lines showed a similar phenotype to BARI Gom-25, although visual differences such as dwarfing, giant plants, early and late flowering and altered leaf morphology were seen in some lines. By developing an assay for salt tolerance, and by screening the mutagenized population, we identified 70 lines exhibiting increased salt tolerance. The selected lines typically showed a 70% germination rate on filter paper soaked in 200 mM NaCl, compared to 0–30% for BARI Gom-25. From two of the salt-tolerant OlsAro lines (OA42 and OA70), genomic DNA was sequenced to 15x times coverage. A comparative analysis against the BARI Gom-25 genomic sequence identified a total of 683,201 (OA42), and 768,954 (OA70) SNPs distributed throughout the three sub-genomes (A, B and D). The mutation frequency was determined to be approximately one per 20,000 bp. All the 70 selected salt-tolerant lines were tested for root growth in the laboratory, and under saline field conditions in Bangladesh. The results showed that all the lines selected for tolerance showed a better salt tolerance phenotype than both BARI Gom-25 and other local wheat varieties tested. Conclusion: The mutant wheat population developed here will be a valuable resource in the development of novel salt-tolerant varieties for the benefit of saline farming.

12 November 2018 in Frontiers in Immunology
Verified
Journal Article
Open access
Maryam DadarMaryam Dadar
Maryam Dadar
SCSandip Chakraborty
Sandip Chakraborty
Kuldeep DhamaKuldeep Dhama
Kuldeep Dhama
MPMinakshi Prasad
Minakshi Prasad
RKRekha Khandia
Rekha Khandia
WCWanpen Chaicumpa
Wanpen Chaicumpa
Human papillomavirus (HPV) is a viral infection with skin-to-skin based transmission mode. HPV annually caused over 500,000 cancer cases including cervical, anogenital and oropharyngeal cancer among others. HPV vaccination has become a public-health concern, worldwide, to prevent the cases of HPV infections including precancerous lesions, cervical cancers, and genital warts especially in adolescent female and male population by launching national programs with international alliances. Currently, available prophylactic and therapeutic vaccines are expensive to be used in developing countries for vaccination programs. The recent progress in immunotherapy, biotechnology, recombinant DNA technology and molecular biology along with alternative and complementary medicinal systems have paved novel ways and valuable opportunities to design and develop effective prophylactic and therapeutic vaccines, drugs and treatment approach to counter HPV effectively. Exploration and more researches on such advances could result in the gradual reduction in the incidences of HPV cases across the world. The present review presents a current global scenario and futuristic prospects of the advanced prophylactic and therapeutic approaches against HPV along with recent patents coverage of the progress and advances in drugs, vaccines and therapeutic regimens to effectively combat HPV infections and its cancerous conditions.

1 February 2009 in Advances in Bioinformatics
Verified
Journal Article
Open access
PDF file
SHSameer Hassan
Sameer Hassan
VMVasantha Mahalingam
Vasantha Mahalingam
VKVanaja Kumar
Vanaja Kumar
Synonymous codon usage of protein coding genes of thirty two completely sequenced mycobacteriophage genomes was studied using multivariate statistical analysis. One of the major factors influencing codon usage is identified to be compositional bias. Codons ending with either C or G are preferred in highly expressed genes among which C ending codons are highly preferred over G ending codons. A strong negative correlation between effective number of codons (Nc) and GC3s content was also observed, showing that the codon usage was effected by gene nucleotide composition. Translational selection is also identified to play a role in shaping the codon usage operative at the level of translational accuracy. High level of heterogeneity is seen among and between the genomes. Length of genes is also identified to influence the codon usage in 11 out of 32 phage genomes. Mycobacteriophage Cooper is identified to be the highly biased genome with better translation efficiency comparing well with the host specific tRNA genes.

1 September 2015 in Journal of Molecular Graphics and Modelling
Verified
Journal Article
Closed access
APAmudha Prabu
Amudha Prabu
SHSameer Hassan
Sameer Hassan
PRPrabuseenivasan
Prabuseenivasan
ASA.S. Shainaba
A.S. Shainaba
LHLuke Elizabeth Hanna
Luke Elizabeth Hanna
VKVanaja Kumar
Vanaja Kumar

1 April 2008 in Journal of Microbiological Methods
Verified
Journal Article
Closed access
ADAzger Dusthackeer
Azger Dusthackeer
VKVanaja Kumar
Vanaja Kumar
Selvakumar SubbianSelvakumar Subbian
Selvakumar Subbian
GSGomathi Sivaramakrishnan
Gomathi Sivaramakrishnan
GZGuofang Zhu
Guofang Zhu
NRNarayanan Paranji Rama
Narayanan Paranji Rama

1 December 2019 in Computational Biology and Chemistry
Verified
Journal Article
Closed access
SHSameer Hassan
Sameer Hassan
JLJohanna Lethin
Johanna Lethin
RBRasmus Blomberg
Rasmus Blomberg
HMHesam Mousavi
Hesam Mousavi
HAHenrik Aronsson
Henrik Aronsson