Alim Seit-Nebi

Dr. Alim Seit-Nebi

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Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2011 in Physiological Reviews
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EMEvgeny V. Mymrikov
Evgeny V. Mymrikov
ASAlim Seit-Nebi
Alim Seit-Nebi
NGNikolai B. Gusev
Nikolai B. Gusev
Modern classification of the family of human small heat shock proteins (the so-called HSPB) is presented, and the structure and properties of three members of this family are analyzed in detail. Ubiquitously expressed HSPB1 (HSP27) is involved in the control of protein folding and, when mutated, plays a significant role in the development of certain neurodegenerative disorders. HSPB1 directly or indirectly participates in the regulation of apoptosis, protects the cell against oxidative stress, and is involved in the regulation of the cytoskeleton. HSPB6 (HSP20) also possesses chaperone-like activity, is involved in regulation of smooth muscle contraction, has pronounced cardioprotective activity, and seems to participate in insulin-dependent regulation of muscle metabolism. HSPB8 (HSP22) prevents accumulation of aggregated proteins in the cell and participates in the regulation of proteolysis of unfolded proteins. HSPB8 also seems to be directly or indirectly involved in regulation of apoptosis and carcinogenesis, contributes to cardiac cell hypertrophy and survival and, when mutated, might be involved in development of neurodegenerative diseases. All small heat shock proteins play important “housekeeping” roles and regulate many vital processes; therefore, they are considered as attractive therapeutic targets.

1 October 2001 in Nucleic Acids Research
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ASAlim Seit-Nebi
Alim Seit-Nebi
LFLudmila Frolova
Ludmila Frolova
JJJust Justesen
Just Justesen
LKLev Kisselev
Lev Kisselev
Previously, we have shown that all class-1 polypeptide release factors (RFs) share a common glycine-glycine-glutamine (GGQ) motif, which is critical for RF activity. Here, we subjected to site-directed mutagenesis two invariant amino acids, Gln185 and Arg189, situated in the GGQ minidomain of human eRF1, followed by determination of RF activity and the ribosome binding capacity for mutant eRF1. We show that replacement of Gln185 with polar amino acid residues causes partial inactivation of RF activity; Gln185Ile, Arg189Ala and Arg189Gln mutants are completely inactive; all mutants that retain partial RF activity respond similarly to three stop codons. We suggest that loss of RF activity for Gln185 and Arg189 mutants is caused by distortion of the conformation of the GGQ minidomain but not by damage of the stop codon recognition site of eRF1. Our data are inconsistent with the model postulating direct involvement of Gln185 side chain in orientation of water molecule toward peptidyl-tRNA ester bond at the ribosomal peptidyl transferase centre. Most of the Gln185 mutants exhibit reduced ability to bind to the ribosome, probably, to rRNA and/or (peptidyl)-tRNA(s). The data suggest that the GGQ motif is implicated both in promoting peptidyl-tRNA hydrolysis and binding to the ribosome.

13 February 2002 in RNA
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LFLudmila Frolova
Ludmila Frolova
ASAlim Seit-Nebi
Alim Seit-Nebi
LKLev Kisselev
Lev Kisselev
Class-1 polypeptide chain release factors (RFs) play a key role in translation termination. Eukaryotic (eRF1) and archaeal class-1 RFs possess a highly conserved Asn-Ile-Lys-Ser (NIKS) tetrapeptide located at the N-terminal domain of human eRF1. In the three-dimensional structure, NIKS forms a loop between helices. The universal occurrence and exposed nature of this motif provoke the appearance of hypotheses postulating an essential role of this tetrapeptide in stop codon recognition and ribosome binding. To approach this problem experimentally, site-directed mutagenesis of the NIKS (positions 61–64) in human eRF1 and adjacent amino acids has been applied followed by determination of release activity and ribosome-binding capacity of mutants. Substitutions of Asn61 and Ile62 residues of the NIKS cause a decrease in the ability of eRF1 mutants to promote termination reaction in vitro, but to a different extent depending on the stop codon specificity, position, and nature of the substituting residues. This observation points to a possibility that Asn-Ile dipeptide modulates the specific recognition of the stop codons by eRF1. Some replacements at positions 60, 63, and 64 cause a negligible (if any) effect in contrast to what has been deduced from some current hypotheses predicting the structure of the termination codon recognition site in eRF1. Reduction in ribosome binding revealed for Ile62, Ser64, Arg65, and Arg68 mutants argues in favor of the essential role played by the right part of the NIKS loop in interaction with the ribosome, most probably with ribosomal RNA.

15 December 2003 in European Journal of Biochemistry
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OBOlesya V. Bukach
Olesya V. Bukach
ASAlim Seit-Nebi
Alim Seit-Nebi
SMSteven B. Marston
Steven B. Marston
Nikolai GusevNikolai Gusev
Nikolai Gusev
Human heat shock protein of apparent molecular mass 20 kDa (Hsp20) and its mutant, S16D, mimicking phosphorylation by cyclic nucleotide‐dependent protein kinases, were cloned and expressed in Escherichia coli. The proteins were obtained in a homogeneous state without utilization of urea or detergents. On size exclusion chromatography at neutral pH, Hsp20 and its S16D mutant were eluted as symmetrical peaks with an apparent molecular mass of 55–60 kDa. Chemical crosslinking resulted in the formation of dimers with an apparent molecular mass of 42 kDa. At pH 6.0, Hsp20 and its S16D mutant dissociated, and were eluted in the form of two peaks with apparent molecular mass values of 45–50 and 28–30 kDa. At pH 7.0–7.5, the chaperone activity of Hsp20 (measured by its ability to prevent the reduction‐induced aggregation of insulin or heat‐induced aggregation of yeast alcohol dehydrogenase) was similar to or higher than that of commercial α‐crystallin. Under these conditions, the S16D mutant of Hsp20 possessed lower chaperone activity than the wild‐type protein. At pH 6.0, both α‐crystallin and Hsp20 interacted with denatured alcohol dehydrogenase; however, α‐crystallin prevented, whereas Hsp20 either did not affect or promoted, the heat‐induced aggregation of alcohol dehydrogenase. The mixing of wild‐type human Hsp27 and Hsp20 resulted in a slow, temperature‐dependent formation of hetero‐oligomeric complexes, with apparent molecular mass values of 100 and 300 kDa, which contained approximately equal amounts of Hsp27 and Hsp20 subunits. Phosphorylation of Hsp27 by mitogen activated protein kinase‐activated protein kinase 2 was mimicked by replacing Ser15, 78 and 82 with Asp. A 3D mutant of Hsp27 mixed with Hsp20 rapidly formed a hetero‐oligomeric complex with an apparent molecular mass of 100 kDa, containing approximately equal quantities of two small heat shock proteins.

1 October 2002 in The EMBO Journal
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LCLaurent Chavatte
Laurent Chavatte
ASAlim Seit-Nebi
Alim Seit-Nebi
VDVera Dubovaya
Vera Dubovaya
AFAlain Favre
Alain Favre
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.

13 May 2007 in Nature Immunology
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YKYoung Jun Kang
Young Jun Kang
Sung Ouk KimSung Ouk Kim
Sung Ouk Kim
SSShigeki Shimada
Shigeki Shimada
MOMotoyuki Otsuka
Motoyuki Otsuka
ASAlim Seit-Nebi
Alim Seit-Nebi
JHJiahuai Han
Jiahuai Han