In our study, a complete review of the literature, critical evaluation and thermodynamic assessment of the Cu-Zn, Cu-Se and Zn-Se binary systems were carried out. The modified quasi-chemical model (MQM) was applied to describe the Gibbs energy of the liquid phase. The Gibbs energies of all intermetallic compounds and terminal solid solutions were described using the compound energy formalism (CEF) model. The re-optimization of the Cu-Zn binary system was carried out by considering the ordered bcc_B2 crystal structure of the β’ phase. Moreover, the β and δ phases in the Cu-Zn binary system with the same bcc_A2 crystal structure were modeled as one single phase in the present work. A self-consistent thermodynamic database was constructed for the Cu-Zn, Cu-Se and Zn-Se binary systems, work that formed part of a comprehensive thermodynamic database development project researching zinc-based biodegradable materials.