Nikolay Bondarev

Mr. Nikolay Bondarev

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Vladimir BurmistrovVladimir Burmistrov
Vladimir Burmistrov
Christophe MorisseauChristophe Morisseau
Christophe Morisseau
Denis BabkovDenis Babkov
Denis Babkov
TGTatiana Golubeva
Tatiana Golubeva
DPDmitry Pitushkin
Dmitry Pitushkin
BHBruce Hammock
Bruce Hammock
The inhibitory potency of the series of inhibitors of the soluble epoxide hydrolase (sEH) based on the selenourea moiety and containing adamantane and aromatic lipophilic groups ranges from 34.3 nM to 1.2 μM. The most active compound 5d possesses aliphatic spacers between the selenourea group and lipophilic fragments. Synthesized compounds were tested against the LPS-induced activation of primary murine macrophages. The most prominent anti-inflammatory activity, defined as a suppression of nitric oxide synthesis by LPS-stimulated macrophages, was demonstrated for compounds 4a and 5b. The cytotoxicity of the obtained substances was studied using human neuroblastoma and fibroblast cell cultures. Using these cell assays, the cytotoxic concentration for 4a was 4.7–18.4 times higher than the effective anti-inflammatory concentration. The genotoxicity and the ability to induce oxidative stress was studied using bacterial lux-biosensors. Substance 4a does not exhibit genotoxic properties, but it can cause oxidative stress at concentrations above 50 µM. Put together, the data showed the efficacy and safety of compound 4a.

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NBNikolay Bondarev
Nikolay Bondarev
KIKarina Ivanenko
Karina Ivanenko
EKElmira Khabusheva
Elmira Khabusheva
TLTimofey Lebedev
Timofey Lebedev
IMIlya Vladimirovich Manukhov
Ilya Vladimirovich Manukhov
VPVladimir S. Prassolov
Vladimir S. Prassolov
Methionine dependence of malignant cells is one of the cancer hallmarks. It is well described that methionine deprivation drives cancer cells death, both in vitro and in vivo. Methionine gamma-lyase (MGL) isolated from different species or obtained by genetic engineering can be used for effective methionine depletion. In this work, we show that MGL S3, a genetically engineered protein comprised of MGL from Clostridium sporogenesis fused to epidermal growth factor (EGF)-like peptide, reduces, in vitro, the number of cancer cells of four different origins—neuroblastoma, lung, breast, and colon cancer. We reveal that MGL S3 is more toxic for neuroblastoma SH-SY5Y and lung cancer H1299 cells compared to MGL tetani, and causes cell death by the induction of apoptosis. In addition, the observed death of cells treated with MGL S3 is accompanied by the prominent downregulation of ERK activity. By the analysis of transcriptomic data of more than 1500 cancer cell lines and patient samples, we show that the high expression of four genes from the methionine metabolism pathway (AHCY, CBS, DNMT3A, and MTAP) is associated with poor prognosis for breast cancer and neuroblastoma patients. Additionally, cells of these origins are characterized by a high correlation between EGFR dependency and DNMT3A/CBS expression. Finally, we demonstrate the ability of MGL S3 to enhance the sensitivity of H1299 cells to EGFR inhibition with gefitinib.

25 November 2023 in Biochemical and Biophysical Research Communications
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NBNikolay Bondarev
Nikolay Bondarev
DBD.F. Bagaeva
D.F. Bagaeva
SBSergey Vladimirovich Bazhenov
Sergey Vladimirovich Bazhenov
MBM.M. Buben
M.M. Buben
NBN.V. Bulushova
N.V. Bulushova
IMIlya Vladimirovich Manukhov
Ilya Vladimirovich Manukhov

6 December 2025 in Biosensors
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VFVadim Fomin
Vadim Fomin
SSSvetlana V. Smirnova
Svetlana V. Smirnova
SBSergey Vladimirovich Bazhenov
Sergey Vladimirovich Bazhenov
AKAminat Kurkieva
Aminat Kurkieva
NBNikolay Bondarev
Nikolay Bondarev
SASerikbai Karimovich Abilev
Serikbai Karimovich Abilev
The fluorescent dyes 9-aminoacridine (9-AA) and acridine orange (AO) are known mutagens that induce frameshift mutations in cells by intercalating between DNA bases. However, these chemicals can also affect other cellular components, such as proteins. In this study, we tested the ability of 9-AA and AO to induce heat shock in bacteria using the following methods: lux-biosensors based on Escherichia coli cells with the luxCDABE genes transcriptionally fused to heat shock-specific inducible promoters, RT-qPCR, and nanoDSF. We demonstrated that acridine dyes not only induce mutagenesis but also cause heat shock in bacterial cells. AO significantly reduced the melting temperature of proteins and strongly activated σE- and σ32-dependent promoters, but not PluxC, which is activated by elevated temperatures via a different mechanism. In contrast, 9-AA weakly denatured the proteins and induced the σE-dependent promoter; however, it activated the σ32-dependent promoters and PluxC, supporting the hypothesis that the σ32 heat shock response system is activated via hairpin RNA denaturation by 9-AA. The study on the application of lux-biosensors was hampered by the high general toxicity and luminescence shielding effect of AO, and RT-qPCR’s sensitivity was insufficient for detection of the response to 9-AA. Thus, methodologically, it is justified to conduct a comprehensive study of substances that cause heat shock or affect bioluminescence by both RT-qPCR and lux-biosensors.

8 September 2026 in Biochemical and Biophysical Research Communications
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DBD.F. Bagaeva
D.F. Bagaeva
AYA.A. Yaskovets
A.A. Yaskovets
GNG.A. Nosov
G.A. Nosov
NBNikolay Bondarev
Nikolay Bondarev
NIN.S. Ilyinsky
N.S. Ilyinsky
VGV.I. Gordeliy
V.I. Gordeliy