Benjamin Barnes

Dr. Benjamin Barnes

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Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 January 2014 in PLOS ONE
Verified
Journal Article
Open access
PDF file
DPDianne Pulte
Dianne Pulte
LJLina Jansen
Lina Jansen
AGAdam Gondos
Adam Gondos
AKAlexander Katalinic
Alexander Katalinic
BBBenjamin Barnes
Benjamin Barnes
TGthe GEKID Cancer Survival Working Group
the GEKID Cancer Survival Working Group
Adulthood acute lymphoblastic leukemia (ALL) is a rare disease. In contrast to childhood ALL, survival for adults with ALL is poor. Recently, new protocols, including use of pediatric protocols in young adults, have improved survival in clinical trials. Here, we examine population level survival in Germany and the United States (US) to gain insight into the extent to which changes in clinical trials have translated into better survival on the population level. Data were extracted from the Surveillance, Epidemiology, and End Results database in the US and 11 cancer registries in Germany. Patients age 15–69 diagnosed with ALL were included. Period analysis was used to estimate 5-year relative survival (RS). Overall 5-year RS was estimated at 43.4% for Germany and 35.5% for the US (p = 0.004), with a decrease in survival with increasing age. Survival was higher in Germany than the US for men (43.6% versus 37.7%, p = 0.002) but not for women (42.4% versus 40.3%, p>0.1). Five-year RS estimates increased in Germany and the US between 2002 and 2006 by 11.8 and 7.3 percent units, respectively (p = 0.02 and 0.04, respectively). Survival for adults with ALL continues to be low compared with that for children, but a substantial increase in 5-year survival estimates was seen from 2002 to 2006 in both Germany and the US. The reasons for the survival differences between both countries require clarification.

26 November 2014 in International Journal of Cancer
Verified
Journal Article
Closed access
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LJLina Jansen
Lina Jansen
FCFelipe A. Castro
Felipe A. Castro
AGAdam Gondos
Adam Gondos
AKAgne Krilaviciute
Agne Krilaviciute
BBBenjamin Barnes
Benjamin Barnes
FGfor the GEKID Cancer Survival Working Group
for the GEKID Cancer Survival Working Group

1 August 2011 in Cancer Epidemiology
Verified
Journal Article
Closed access
BBBenjamin Barnes
Benjamin Barnes
KSKaren Steindorf
Karen Steindorf
RHRebecca Hein
Rebecca Hein
DFDieter Flesch-Janys
Dieter Flesch-Janys
JCJenny Chang-Claude
Jenny Chang-Claude

7 February 2008 in Endocrinology
Verified
Journal Article
Open access
PDF file
DHDeanna L. Howarth
Deanna L. Howarth
SLSheran H. W. Law
Sheran H. W. Law
BBBenjamin Barnes
Benjamin Barnes
JHJulie M. Hall
Julie M. Hall
DHDavid E. Hinton
David E. Hinton
SKSeth Kullman
Seth Kullman
The availability of multiple teleost (bony fish) genomes is providing unprecedented opportunities to understand the diversity and function of gene duplication events using comparative genomics. Here we describe the cloning and functional characterization of two novel vitamin D receptor (VDR) paralogs from the freshwater teleost medaka (Oryzias latipes). VDR sequences were identified through mining of the medaka genome database in which gene organization and structure was determined. Two distinct VDR genes were identified in the medaka genome and mapped to defined loci. Each VDR sequence exhibits unique intronic organization and dissimilar 5′ untranslated regions, suggesting they are not isoforms of the same gene locus. Phylogenetic comparison with additional teleosts and mammalian VDR sequences illustrate that two distinct clusters are formed separating aquatic and terrestrial species. Nested within the teleost cluster are two separate clades for VDRα and VDRβ. The topology of teleost VDR sequences is consistent with the notion of paralogous genes arising from a whole genome duplication event prior to teleost radiation. Functional characterization was conducted through the development of VDR expression vectors including Gal4 chimeras containing the yeast Gal4 DNA binding domain fused to the medaka VDR ligand binding domain and full-length protein. The common VDR ligand 1α,25-dihydroxyvitamin D3 [1α,25(OH)2D3] resulted in significant transactivation activity with both the Gal4 and full-length constructs of medaka (m) VDRβ. Comparatively, transactivation of mVDRα with 1α,25(OH)2D3 was highly attenuated, suggesting a functional divergence between these two nuclear receptor paralogs. We additionally demonstrate through coactivator studies that mVDRα is still functional; however, it exhibits a different sensitivity to 1α,25(OH)2D3, compared with VDRβ. These results suggest that in mVDRα and VDRβ have undergone a functional divergence through a process of sub- and/or neofunctionalization of VDR nuclear receptor gene pairs.

JFJuan Victor Ariel Franco
Juan Victor Ariel Franco
LGLuis Ignacio Garegnani
Luis Ignacio Garegnani
GOGisela Viviana Oltra
Gisela Viviana Oltra
MMMaria-Inti Metzendorf
Maria-Inti Metzendorf
LTLeonel Fabrizio Trivisonno
Leonel Fabrizio Trivisonno
CSChrista Scheidt-Nave
Christa Scheidt-Nave
Post-COVID-19 conditions, also known as ‘Long-COVID-19’, describe a longer and more complex course of illness than acute COVID-19 with no widely accepted uniform case definition. We aimed to map the available evidence on persistent symptoms and sequelae following SARS-CoV-2 in children and adults. We searched the Cochrane COVID-19 Study Register and the WHO COVID-19 Global literature on coronavirus disease database on 5 November 2021. We included longitudinal and cross-sectional studies and we extracted their characteristics, including the type of core outcomes for post-COVID-19 conditions. We included 565 studies (657 records). Most studies were uncontrolled cohort studies. The median follow-up time was 13 weeks (IQR 9 to 24). Only 72% of studies were conducted in high-income countries, 93% included unvaccinated adults with mild-to-critical disease, only 10% included children and adolescents, and less than 5% included children under the age of five. While most studies focused on health symptoms, including respiratory symptoms (71%), neurological symptoms (57%), fatigue (54%), pain (50%), mental functioning (43%), cardiovascular functioning (40%), and post-exertion symptoms (28%), cognitive function (26%), fewer studies assessed other symptoms such as overall recovery (24%), the need for rehabilitation (18%), health-related quality of life (16%), changes in work/occupation and study (10%), or survival related to long-COVID-19 (4%). There is a need for controlled cohort studies with long-term follow-up and a focus on overall recovery, health-related quality of life, and the ability to perform daily tasks. Studies need to be extended to later phases of the pandemic and countries with low resources.

13 May 2016 in International Journal of Cancer
Verified
Journal Article
Closed access
PDF file
DPDianne Pulte
Dianne Pulte
LJLina Jansen
Lina Jansen
FCFelipe A. Castro
Felipe A. Castro
AKAgne Krilaviciute
Agne Krilaviciute
AKAlexander Katalinic
Alexander Katalinic
FGfor the GEKID Cancer Survival Working Group
for the GEKID Cancer Survival Working Group