Gustavo Seabra

Dr. Gustavo Seabra

orcid

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 May 2007 in The Journal of Physical Chemistry A
Verified
Journal Article
Closed access
GSGustavo Seabra
Gustavo Seabra
RWRoss C. Walker
Ross C. Walker
MEMarcus Elstner
Marcus Elstner
DCDavid A. Case
David A. Case
ARAdrian E. Roitberg
Adrian E. Roitberg

23 May 2024 in Briefings in Bioinformatics
Verified
Journal Article
Open access
QTQiaosi Tang
Qiaosi Tang
RRRanjala Ratnayake
Ranjala Ratnayake
GSGustavo Seabra
Gustavo Seabra
ZJZhe Jiang
Zhe Jiang
RFRuogu Fang
Ruogu Fang
YLYanjun Li
Yanjun Li
Morphological profiling is a valuable tool in phenotypic drug discovery. The advent of high-throughput automated imaging has enabled the capturing of a wide range of morphological features of cells or organisms in response to perturbations at the single-cell resolution. Concurrently, significant advances in machine learning and deep learning, especially in computer vision, have led to substantial improvements in analyzing large-scale high-content images at high throughput. These efforts have facilitated understanding of compound mechanism of action, drug repurposing, characterization of cell morphodynamics under perturbation, and ultimately contributing to the development of novel therapeutics. In this review, we provide a comprehensive overview of the recent advances in the field of morphological profiling. We summarize the image profiling analysis workflow, survey a broad spectrum of analysis strategies encompassing feature engineering– and deep learning–based approaches, and introduce publicly available benchmark datasets. We place a particular emphasis on the application of deep learning in this pipeline, covering cell segmentation, image representation learning, and multimodal learning. Additionally, we illuminate the application of morphological profiling in phenotypic drug discovery and highlight potential challenges and opportunities in this field.

1 November 2021 in Journal of Chemical Information and Modeling
Verified
Journal Article
Closed access
TDTimothy B. Dunn
Timothy B. Dunn
GSGustavo Seabra
Gustavo Seabra
TKTaewon David Kim
Taewon David Kim
KJK. Eurídice Juárez-Mercado
K. Eurídice Juárez-Mercado
CLChenglong Li
Chenglong Li
RQRamon Alain Miranda Quintana
Ramon Alain Miranda Quintana

15 July 2009 in The Journal of Physical Chemistry A
Verified
Journal Article
Closed access
GSGustavo Seabra
Gustavo Seabra
RWRoss C. Walker
Ross C. Walker
ARAdrian E. Roitberg
Adrian E. Roitberg

18 August 2004 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
GSGustavo Seabra
Gustavo Seabra
IKI. G. Kaplan
I. G. Kaplan
VZV. G. Zakrzewski
V. G. Zakrzewski
JOJ. V. Ortiz
J. V. Ortiz
Together with ionization potentials, cross sections provide valuable information for the interpretation of photoelectron spectra. We have developed a program to perform ab initio calculations of photoionization cross sections within the electric dipole approximation using electron propagator theory. Applications to the first-row hydrides CH4, NH3, H2O, and HF, using several approximations for the propagator self-energy and the plane-wave and orthogonalized-plane-wave approximations to represent the photoelectron, as well as comparison to experimental data, are presented. This program is implemented within the quantum chemistry package GAUSSIAN.

1 September 2019 in International Journal of Biological Macromolecules
Verified
Journal Article
Closed access
MBMarcela Rodrigues Barros
Marcela Rodrigues Barros
TMThaís Meira Menezes
Thaís Meira Menezes
LSLucas Pereira da Silva
Lucas Pereira da Silva
DPDartagnam Sá Pires
Dartagnam Sá Pires
JPJefferson Luiz Princival
Jefferson Luiz Princival
JNJorge Luiz Neves
Jorge Luiz Neves