Essential oils (EOs) from aromatic plants seem to have the potential to control several fungal pathogens and food contaminants. Botrytis cinerea is the main strawberry fruit contaminant causing high losses during storage. Here, thirteen EOs applied in the vapor phase were evaluated for their potential to inhibit the growth of three different strains of B. cinerea isolated from strawberry fruits. Eight EOs (lemongrass, litsea, lavender, peppermint, mint, petitgrain, sage, and thyme) were able to completely inhibit the growth of B. cinerea for 7 days when applied at a concentration of 625 μL·L⁻¹. Four EOs with the lowest minimal inhibition concentrations (thyme, peppermint, lemongrass, and litsea) have been tested on strawberry fruits intentionally inoculated by B. cinerea. All four EOs showed high inhibition at a concentration of 250 or 500 μL·L⁻¹, but only peppermint EO was able to completely inhibit B. cinerea lesion development at a concentration of 125 μL·L⁻¹. The sensory evaluation of strawberries treated by EOs at a concentration 125 μL·L⁻¹ resulted in a statistically significant decrease in taste, aftertaste, aroma, and overall quality. Lemongrass and litsea EOs scored better than thyme and peppermint ones, thus forming two viable methods for B. cinerea suppression and the extension of packed strawberries’ shelf life.

Recent reports of P. olsonii causing postharvest rot of cherry tomatoes emphasize the need for effective strategies to prolong fruit shelf life. This study is the first to explore the use of essential oils (EOs), recognized for their antimicrobial properties, as a potential method to prevent postharvest losses from P. olsonii. Antifungal activity was tested for ten EOs at a concentration of 625 μL/L using the vapor diffusion method. Thyme, wild thyme, savory, oregano, and marjoram completely inhibited fungal growth over 14 days. Thyme EO, at a minimum inhibitory concentration (MIC) of 250 μL/L, fully inhibited all strains, while oregano, wild thyme, and savory were effective at 500 μL/L. Marjoram EO showed weaker activity. The lowest IC90 values, ranging from 35.72 to 162.72 μL/L, were estimated for thyme and oregano. In cherry tomatoes, oregano EO completely halted P. olsonii growth at 250 μL/L; thyme was effective for seven days; wild thyme and savory for two days. Thyme EO prevented P. olsonii spore germination at 500 μL/L for seven days, though germination occurred at half that concentration. The IC90 values varied between 256.2 and 138.7 μL/L depending on the strain. The vapor phase of EOs at 125 μL/L influenced the sensory characteristics of cherry tomatoes; however, for thyme and oregano, this effect was not negative due to their culinary association with tomato flavor. The selected EOs could be used to control and prevent postharvest fruit losses, but further research is needed to optimize their application.

A total of 67 samples of spices and herbs were tested for mould contamination. From 50.7% of samples, moulds were not isolated. The most dominant genera were Aspergillus and Penicillium. Potential producers of mycotoxins Aspergillus spp. and Penicillium spp. were tested for the ability to produce some mycotoxins. Isolates of potentially toxinogenic species were found to produce various mycotoxins, namely alfatoxin B1 (Aspergillus flavus), cyclopiazonic acid (Aspergillus flavus), sterigmatocystin (Emericella nidulans), roquefortine C (Penicillium allii, P. chrysogenum, P. crustosum, P. expansum), penitrem A (P. crustosum) and patulin (P. expansum). Some of the tested isolates produce two mycotoxins: A. flavus (aflatoxin B1 and cyclopiazonic acid), P. crustosum (roquefortine C and patulin) and P. expansum (roquefortine C and patulin). None of the tested isolates of Aspergillus section Nigri screened, appeared to produce ochratoxin A. Totally 11 samples were analysed for the presence of aflatoxins and ochratoxin A. Aflatoxin B1 was found in 5 (45.5%) out of 11 samples analysed with levels ranging from 0.14 to 2.9 µg.kg-1. In one sample we detected aflatoxin G1. Ochratoxin A was found in 3 samples (27.3%), with levels ranging from 2.2 to 5.19 µg.kg-1. No sample was contaminated by aflatoxins or ochratoxin A above the maximum admitted threshold established by the European legislation.

In this study, contamination by microscopic fungi (focused on Penicillium and Aspergillus species) of 75 fruit samples (strawberries, blackberries, blueberries, raspberries, grapes) and 29 tomato samples, which were obtained from Slovak stores was investigated. Totally 93.3% of fruit samples were contaminated with micromycetes (70.6% Botrytis spp., 52.0% Cladosporium spp., 42.7% Penicillium spp., 13.3% Rhizopus spp., 8.0% Alternaria spp., 6.7% Mucor spp., 5.3% Aspergillus spp., 4.0% Fusarium spp., and 1.3% Epicoccum spp.) and 6.7% of samples were contaminated with yeasts. The presence of 15 species of the genus Penicillium in fruits, namely P. atramentosum, P. aurantiogriseum, P. brevicompactum, P. bialowiezense, P. citrinum, P. crustosum, P. digitatum, P. expansum, P. fellutanum, P. glabrum, P. hordei, P. italicum, P. kiamense, P. olsonii, and P. purpurescens was found. With the highest frequency, P. brevicompactum (12.0%) and P. expansum (10.7%) were isolated from fruits. Four isolates of the genus Aspergillus were isolated from fruit samples (A. section Clavati, A. section Flavi, and two isolates of A. section Nigri). Thin layer chromatography (TLC) was used for testing of mycotoxin production by selected fungal isolates. Overall, 93.3% of tested Penicillium isolates and one tested Aspergillus of section Clavati proved the ability to produce at least one of the tested mycotoxins. As for tomato samples, 93.1% were contaminated with microscopic filamentous fungi (79.3% Penicillium spp., 24.1% Botrytis spp. and Alternaria spp., 10.3% Cladosporium spp., Mucor spp. and Rhizopus spp., 6.9% Aspergillus spp. and 3.4% Fusarium spp.) and 6.9% samples were contaminated with yeasts. In 65.5% of tomato samples, the occurrence of 8 species of the genus Penicillium (P. brevicompactum, P. crustosum, P. expansum, P. griseofulvum, P. italicum, P. olsonii, P. sublectaticum, P. thomii), and two species of the genus Aspergillus (from section Circumdati and Flavi) was recorded. P. olsonii (58.6%) and P. griseofulvum (10.3%) were isolated with the highest frequency. All 7 tested Penicillium isolates (100.0%) and 1 isolate of the genus Aspergillus (section Flavi), which were obtained from tomatoes, had the ability to produce at least one of the tested mycotoxins. Aspergillus section Flavi isolate (from tomatoes of Slovak origin) produced 5.5 µg.mL-1 of aflatoxin B1, 4.2 µg.mL-1 of aflatoxin B2, 154.4 µg.mL-1 of aflatoxin G1, and 5.6 µg.mL-1 of aflatoxin G2 on 14th day of cultivation on liquid YES medium at 25±1 °C in darkness, and detected by high pressure liquid chromatography (HPLC).

This study assessed the bioconversion efficiency of Hermetia illucens larvae (BSFL) fed on food waste stored under different conditions, focusing on the nutritional and microbial quality of the resulting larval biomass. Food waste was prepared as a fresh diet (FD) or naturally contaminated and stored at 20–22 °C (OS-T, opened storage-tempered) or under refrigeration, at 5–8 °C (CS-C, closed storage-cooled). Refrigerated, closed storage (CS-C) led to the highest rates of waste reduction (91.0%) and bioconversion efficiency (30.2%), with larvae exhibiting the highest protein content (36.83%) compared to the FD (35.5%) and OS-T (34.71%) groups. Microbiome analysis revealed that the CS-C condition promoted beneficial yeasts like Pichia and Diutia, which correlated positively with improved protein content and microbial safety. In contrast, OS-T storage supported spoilage fungi (Mucor, Rhizopus) and elevated total aerobic counts (7.28 log CFU/g), indicating higher microbial risks. The observed trends in waste reduction and protein content most probably relate to differences in microbial profiles, as controlled cooling affected microbial dynamics, preserving substrate quality and supporting larval growth. These findings emphasize the importance of refrigerated, closed storage to optimize bioconversion, improve larval nutritional value, and minimize microbiological hazards.

The aim of this study was evaluation of microbial quality in raw materials (honey, pollen) and evaluation of microbial quality in honey mixture with pollen (2.91 % and 3.85 %) and also dynamics of microbial groups in honey mixtures with pollen after 14 days storage at the room temperature (approximately 25 °C) and in cold store (8 °C). We used dilution plating method for testing of samples. Detections of total plate microbial count (aerobic and anaerobic microorganisms), sporulating bacteria, coliform bacteria, Bifidobacterium sp., Lactobacillus sp. and microscopic fungi were performed. In general, counts of microorganisms decreased in honey mixture with pollen compared to raw pollen and these counts increased compared to natural honey. Total plate count was 5.37 log KTJ.g-1 in pollen; 1.36 log KTJ.g-1 in honey; 2.97 log KTJ.g-1 in honey mixture with 2.91 % pollen and 2.04 log KTJ.g-1 in honey mixture with 3.85 % pollen. Coliform bacteria were detected in pollen (1.77 log KTJ.g-1). Then, we found coliform bacteria in one sample of honey mixtures with pollen (2.91 %) - 1.00 log KTJ.g-1.Bifidobacterium species were detected only in raw pollen. We did not findLactobacillus sp. in any of the samples. Microscopic fungi were detected on two cultivating media. Yeasts were present in pollen sample (average 5.39 log KTJ.g-1), honey mixture with 2.91 % pollen (average 2.51 log KTJ.g-1) and honey mixture with 3.85 % pollen (average 1.58 log KTJ.g-1). Filamentous microscopic fungi were detectable in pollen (average 3.38 log KTJ.g-1), in honey (only on one medium: 1.00 log KTJ.g-1), in honey mixture with 2.91 % pollen (average 1.15 log KTJ.g-1) and in honey mixture with 3.85 % pollen (1.71 %). Raw pollen contained microscopic fungi as Absidiasp., Mucor sp., Alternaria sp. andEmericella nidulans. Honey mixture with 2.91 % pollen after storage (14 days) contained lower microbial counts when compared with the sample analyzed at the beginning, beside sporulating bacteria and filamentous microscopic fungi in sample stored at 8 °C. We recorded growth of anaerobic microorganisms in honey mixture with 3.85 % pollen after storage (8 °C, 25 °C / 14 days).