Ekaterina Kolpakova

Ms. Ekaterina Kolpakova

Chumakov Institute of Poliomyelitis and Viral Encephalitides, Moscow, Moskva, Russia
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 December 2022 in Antiviral Research
Verified
Journal Article
Closed access
ACAlexey A. Chistov
Alexey A. Chistov
SCStepan Chumakov
Stepan Chumakov
IMIgor E. Mikhnovets
Igor E. Mikhnovets
TNTimofei D. Nikitin
Timofei D. Nikitin
NSNikita A. Slesarchuk
Nikita A. Slesarchuk
AUAlexey V Ustinov
Alexey V Ustinov

1 November 2022 in Biomolecules
Verified
Journal Article
Open access
PDF file
ARAnna Rubekina
Anna Rubekina
PKPolina Kamzeeva
Polina Kamzeeva
VAVera A. Alferova
Vera A. Alferova
SEShustova Elena
Shustova Elena
EKEkaterina Kolpakova
Ekaterina Kolpakova
AAAndrey V. Aralov
Andrey V. Aralov
Rose Bengal (RB) is an anionic xanthene dye with multiple useful biological features, including photosensitization properties. RB was studied extensively as a photosensitizer, mostly for antibacterial and antitumor photodynamic therapy (PDT). The application of RB to virus inactivation is rather understudied, and no RB derivatives have been developed as antivirals. In this work, we used a synthetic approach based on a successful design of photosensitizing antivirals to produce RB derivatives for virus photoinactivation. A series of n-alkyl-substituted RB derivatives was synthesized and evaluated as antiviral photosensitizers. The compounds exhibited similar 1O2 generation rate and efficiency, but drastically different activities against SARS-CoV-2, CHIKV, and HIV; with comparable cytotoxicity for different cell lines. Submicromolar-to-subnanomolar activities and high selectivity indices were detected for compounds with C4-6 alkyl (SARS-CoV-2) and C6-8 alkyl (CHIKV) chains. Spectrophotometric assessment demonstrates low aqueous solubility for C8-10 congeners and a significant aggregation tendency for the C12 derivative, possibly influencing its antiviral efficacy. Initial evaluation of the synthesized compounds makes them promising for further study as viral inactivators for vaccine preparations.

2 January 2022 in International Journal of Infectious Diseases
Verified
Journal Article
Open access
AYAlexander Yakovlev
Alexander Yakovlev
IBIlmira K. Belyaletdinova
Ilmira K. Belyaletdinova
LMLyudmila N. Mazankova
Lyudmila N. Mazankova
ESElmira R. Samitova
Elmira R. Samitova
IOIsmail M. Osmanov
Ismail M. Osmanov
AIAydar A. Ishmukhametov
Aydar A. Ishmukhametov
This study aimed to estimate the impact of the COVID-19 pandemic on the circulation of non-SARS-CoV-2 respiratory viruses and the clinical characteristics of COVID-19 in hospitalized children. A total of 226 and 864 children admitted to the Children's City Clinical Hospital with acute respiratory infection in September to November of 2018 and 2020 in Moscow were tested for respiratory viruses using multiplex polymerase chain reaction (PCR) and Mycoplasma pneumoniae/Chlamydia pneumoniae using enzyme-linked immunosorbent assay. The detection rate of non-SARS-CoV-2 viruses in 2020 was lower than in 2018, 16.9% versus 37.6%. An increase in the median age of children with respiratory viruses was observed during the pandemic (3 years vs 1 year). There was no significant difference in the frequency of intensive care unit (ICU) admission in children with SARS-CoV-2 and other respiratory virus infections (2.7% vs 2.9%). SARS-CoV-2 and human rhinoviruses, human metapneumoviruses, and human adenoviruses showed significantly lower than expected co-detection rates during co-circulation. An increase in body mass index (BMI) or bacterial coinfection leads to an increased risk of ICU admission and a longer duration of COVID-19 in children. The COVID-19 pandemic led to significant changes in the epidemiological characteristics of non-SARS-CoV-2 respiratory viruses during the autumn peak of the 2020 pandemic, compared with the same period in 2018.

22 September 2022 in Pharmaceuticals
Verified
Journal Article
Open access
PDF file
ASAnna Shtro
Anna Shtro
AGAnzhelika V. Garshinina
Anzhelika V. Garshinina
VAVera A. Alferova
Vera A. Alferova
PKPolina Kamzeeva
Polina Kamzeeva
VVViktor Volok
Viktor Volok
AAAndrey V. Aralov
Andrey V. Aralov
Perylene-based compounds are attracting significant attention due to their high broad-spectrum antiviral activity against enveloped viruses. Despite unambiguous results of in vitro studies and high selectivity index, the poor water solubility of these compounds prevented in vivo evaluation of their antiviral properties. In this work, we synthesized a series of compounds with a perylene pharmacophore bearing positively charged substituents to improve the aqueous solubility of this unique type of antivirals. Three types of charged groups were introduced: (1) quaternary morpholinium salts (3a –b); (2) a 2′-O-l-valinyl-uridine hydrochloride residue (8), and (3) a 3-methylbenzothiazolium cation (10). The synthesized compounds were evaluated based both on antiviral properties in vitro (CHIKV, SARS-CoV-2, and IAV) and on solubility in aqueous media. Compound 10 has the greatest aqueous solubility, making it preferable for pre-evaluation by intragastrical administration in a mouse model of lethal influenza pneumonia. The results indicate that the introduction of a positively charged group is a viable strategy for the design of drug candidates with a perylene scaffold for in vivo studies.