Fedor Bogdanov

Mr. Fedor Bogdanov

Department of Experimental Tumor Biology, N.N. Blokhin National Medical Research Center of Oncology of the Ministry of Health of Russia, Moscow, Moskva, Russia
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Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 January 2023 in Investigational New Drugs
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Alexander ScherbakovAlexander Scherbakov
Alexander Scherbakov
SVSvetlana K. Vorontsova
Svetlana K. Vorontsova
AKAlvina Khamidullina
Alvina Khamidullina
MMMrdanovic Mrdanovic
Mrdanovic Mrdanovic
OAOlga Andreeva
Olga Andreeva
VSValerii Shirinian
Valerii Shirinian
The promising antitumor effects of progesterone derivatives have been identified in many studies. However, the specific mechanism of action of this class of compounds has not been fully described. Therefore, in this study, we investigated the antiproliferative and (anti)estrogenic activities of novel pentacyclic derivatives and benzylidenes of the progesterone series. The antiproliferative effects of the compounds were evaluated on hormone-dependent MCF7 breast cancer cells using the MTT test. Estrogen receptor α (ERα) activity was assessed by a luciferase-based reporter assay. Immunoblotting was used to evaluate the expression of signaling proteins. All benzylidenes demonstrated inhibitory effects with IC50 values below 10 µM, whereas pentacyclic derivatives were less active. These patterns may be associated with the lability of the geometry of benzylidene molecules, which contributes to an increase in the affinity of interaction with the receptor. The selected compounds showed significant anti-estrogenic potency. Benzylidene 1d ((8 S,9 S,10R,13 S,14 S,17 S)-17-[(2E)-3-(4-fluorophenyl)prop-2-enoyl]-10,13-dimethyl-1,2,6,7,8,9,11,12,14,15-decahydrocyclopenta[a]phenanthren-3-one) was the most active in antiproliferative and anti-estrogenic assays. Apoptosis induced by compound 1d was accompanied by decreases in CDK4, ERα, and Cyclin D1 expression. Compounds 1d and 3d were characterized by high inhibitory potency against resistant breast cancer cells. Apoptosis induced by the leader compounds was confirmed by PARP cleavage and flow cytometry analysis. Compound 3d caused cell arrest in the G2/M phase. Further analysis of novel derivatives of the progesterone series is of great importance for medicinal chemistry, drug design, and oncology. Graphical Abstract

16 December 2022 in Pharmaceutics
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ASAnastasiia Sachkova
Anastasiia Sachkova
DADaria V. Andreeva
Daria V. Andreeva
ATAlexander S. Tikhomirov
Alexander S. Tikhomirov
Alexander ScherbakovAlexander Scherbakov
Alexander Scherbakov
DSDiana I. Salnikova
Diana I. Salnikova
Alexey Yu. FedorovAlexey Yu. Fedorov
Alexey Yu. Fedorov
(1) Background: This investigation aimed at developing a series of c-Met-targeting cabozantinib-based PROTACs. (2) Methods: Purification of intermediate and target compounds was performed using column chromatography, in vitro antiproliferation activity was measured using a standard MTT assay and a c-Met degradation assay was performed via the immunoblotting technique. (3) Results: Several compounds exhibited antiproliferative activity towards different cell lines of breast cancer (T47D, MDA-MB-231, SKBR3, HCC1954 and MCF7) at the same level as parent cabozantinib and 7-demethyl cabozantinib. Two target conjugates, bearing a VHL-ligand as an E3-ligase binding moiety and glycol-based linkers, exhibited the effective inhibition of c-Met phosphorylation and an ability to decrease the level of c-Met in HCC1954 cells at micromolar concentrations. (4) Conclusions: Two compounds exhibit c-Met inhibition activity in the nanomolar range and can be considered as PROTAC molecules due to their ability to decrease the total level of c-Met in HCC1954 cells. The structures of the offered compounds can be used as starting points for further evaluation of cabozantinib-based PROTACs.

26 March 2024 in ChemistrySelect
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NVNastassia A. Varabyeva
Nastassia A. Varabyeva
DSDiana I. Salnikova
Diana I. Salnikova
SKStepan Konstantinovich Krymov
Stepan Konstantinovich Krymov
Fedor BogdanovFedor Bogdanov
Fedor Bogdanov
ASAndrey E. Shchekotikhin
Andrey E. Shchekotikhin
YPYuri A. Piven
Yuri A. Piven
An effective approach to 5-triazolyl-substituted 6,7-dihydrobenzo[d]isoxazol-4(5H)-ones and 4,5,6,7-tetrahydrobenzo[d]isoxazoles was developed. The approach included α-keto bromination of 6,7-dihydrobenzo[d]isoxazol-4(5H)-one followed by nucleophilic substitution of bromine with the azide group. For the preparation of 5-azido-6,7-dihydrobenzo[d]isoxazol-4(5H)-one, the carbonyl group at position 4 was reduced to a methylene group under ionic hydrogenation conditions using triethylsilane as a reducing agent. Cu(I)-catalyzed [2+3] cycloaddition of terminal alkynes to both obtained azides was used for the synthesis of two series of triazolyl derivatives. Compounds, which contain in their structures common for some Hsp90 inhibitors 2,4-dihydroxy-5-isopropylphenyl fragment, were evaluated as antiproliferative agents against two breast cancer cell lines: hormone-dependent MCF7 and HER2-positive HCC1954. The lead compound showed half-maximal inhibitory concentration (IC 50 ) values below 5 μM and induced significant changes in the Hsp90 signaling pathways in HER2-positive HCC1954 cells. It increased the expression of Hsp70 (used as a pharmacodynamic marker of Hsp90 inhibition) and inhibited the expression of HER2, p-c-Met, c-Met, and p-AKT. The combination of the selected isoxazole-triazole hybrid molecule and the earlier described apoptosis inducer LCTA-3344 demonstrated a significant antiproliferative effect against HCC1954 cells. The lead compound was revealed to be a promising candidate for future anticancer drug design, particularly against aggressive breast cancer positive for HER2.

25 December 2023 in Pharmaceuticals
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SKStepan Konstantinovich Krymov
Stepan Konstantinovich Krymov
DSDiana I. Salnikova
Diana I. Salnikova
LDLyubov G. Dezhenkova
Lyubov G. Dezhenkova
Fedor BogdanovFedor Bogdanov
Fedor Bogdanov
AKAlexander A. Korlyukov
Alexander A. Korlyukov
ASAndrey E. Shchekotikhin
Andrey E. Shchekotikhin
Breast and other estrogen receptor α-positive cancers tend to develop resistance to existing drugs. Chalcone derivatives possess anticancer activity based on their ability to form covalent bonds with targets acting as Michael acceptors. This study aimed to evaluate the anticancer properties of a series of chalcones (7a–l) with a sulfonamide group attached to the vinyl ketone moiety. Chalconesulfonamides showed a potent antiproliferative effect at low micromolar concentrations against several cancer cell lines, including ERα-positive 4-hydroxytamoxifen-resistant MCF7/HT2. Immunoblotting of samples treated with the lead compound 7e revealed its potent antiestrogenic activity (ERα/GREB1 axis) and induction of PARP cleavage (an apoptosis marker) in breast cancer cells. The obtained compounds represent a promising basis for further development of targeted drugs blocking hormone pathways in cancer cells.
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3 June 2024 in RSC Medicinal Chemistry
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Yulia VolkovaYulia Volkova
Yulia Volkova
Alexander ScherbakovAlexander Scherbakov
Alexander Scherbakov
YDYaraslau Dzichenka
Yaraslau Dzichenka
AKAlexander Y Komkov
Alexander Y Komkov
Fedor BogdanovFedor Bogdanov
Fedor Bogdanov
IZIgor Zavarzin
Igor Zavarzin
Estrogen receptor alpha (ERα) is an important target for the discovery of new therapeutic drugs against hormone-dependent breast cancer. A series of phosphoryl-substituted steroidal pyridazines (Pho-STPYRs) were synthesized and biologically evaluated as potent ERα inhibitors. Pho-STPYRs showed cytotoxicity against breast cancer cells with IC50 values of 5.9 μM and higher. Pho-STPYRs 33 and 34 [IC50 (MCF7) = 6.5 and 5.9 μM, respectively] were found to block the expression of ERα, the main driver of breast cancer growth, and modulate the ERK, cyclin D1, and CDK4 pathways. Compound 34 showed selectivity, anti-estrogenic potency and high antiproliferative efficacy in combination with the AKT inhibitor. Molecular docking was used to more accurately define the binding mode of lead compounds 33 and 34 to ERα. The selectivity analysis showed that lead compounds 33 and 34 produce no effects on cytochromes P450, including CYP7A1, CYP7B1, CYP17A1, CYP19A1, and CYP21A2. In a word, Pho-STPYRs 33 and 34 are promising ERα inhibitors for the treatment of hormone-dependent breast cancer.

5 November 2024 in Bioorganic Chemistry
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Journal Article
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Fedor BogdanovFedor Bogdanov
Fedor Bogdanov
RBR.YU. Balakhonov
R.YU. Balakhonov
EVE.S. Volkov
E.S. Volkov
ISI.V. Sonin
I.V. Sonin
OAOlga Andreeva
Olga Andreeva
VSValerii Shirinian
Valerii Shirinian