Fariba Donovan

Dr. Fariba Donovan

Division of Infectious Disease, Valley Fever Center for Excellence, The University of Arizona, Tucson, AZ 85724, USA
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Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 1998 in Journal of Biological Chemistry
Verified
Journal Article
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SLSteven D. Leidich
Steven D. Leidich
AIAshraf S. Ibrahim
Ashraf S. Ibrahim
YFYue Fu
Yue Fu
AKAnjni Koul
Anjni Koul
CJChad Jessup
Chad Jessup
MGMahmoud A. Ghannoum
Mahmoud A. Ghannoum
The Candida albicans PLB1gene was cloned using a polymerase chain reaction-based approach relying on degenerate oligonucleotide primers designed according to the amino acid sequences of two peptide fragments obtained from a purified candidal enzyme displaying phospholipase activity (Mirbod, F., Banno, Y., Ghannoum, M. A., Ibrahim, A. S., Nakashima, S., Yasuo, K., Cole, G. T., and Nozawa, Y. (1995) Biochim. Biophys. Acta 1257, 181–188). Sequence analysis of a 6.7-kilobase pairEcoRI-ClaI genomic clone revealed a single open reading frame of 1818 base pairs that predicts for a pre-protein of 605 residues. Comparison of the putative candidal phospholipase with those of other proteins in data base revealed significant homology to known fungal phospholipase Bs from Saccharomyces cerevisiae(45%), Penicillium notatum (42%), Torulaspora delbrueckii (48%), and Schizosaccharomyces pombe(38%). Thus, we have cloned the gene encoding a C. albicans phospholipase B homolog. This gene, designated caPLB1, was mapped to chromosome 6. Disruption experiments revealed that the caplb1 null mutant is viable and displays no obvious phenotype. However, the virulence of strains deleted for caPLB1, as assessed in a murine model for hematogenously disseminated candidiasis, was significantly attenuated compared with the isogenic wild-type parental strain. Although deletion of caPLB1 did not produce any detectable effects on candidal adherence to human endothelial or epithelial cells, the ability of the caplb1 null mutant to penetrate host cells was dramatically reduced. Thus, phospholipase B may well contribute to the pathogenicity of C. albicans by abetting the fungus in damaging and traversing host cell membranes, processes which likely increase the rapidity of disseminated infection.

1 January 2006 in Infection and Immunity
Verified
Journal Article
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FDFariba Donovan
Fariba Donovan
RSRuth Schaller
Ruth Schaller
CHChiung Yu Hung
Chiung Yu Hung
JXJianmin Xue
Jianmin Xue
URUtz Reichard
Utz Reichard
GCGarry T. Cole
Garry T. Cole
Urease activity during in vitro growth in the saprobic and parasitic phases of Coccidioides spp. is partly responsible for production of intracellular ammonia released into the culture media and contributes to alkalinity of the external microenvironment. Although the amino acid sequence of the urease of Coccidioides posadasii lacks a predicted signal peptide, the protein is transported from the cytosol into vesicles and the central vacuole of parasitic cells (spherules). Enzymatically active urease is released from the contents of mature spherules during the parasitic cycle endosporulation stage. The endospores, together with the urease and additional material which escape from the ruptured parasitic cells, elicit an intense host inflammatory response. Ammonia production by the spherules of C. posadasii is markedly increased by the availability of exogenous urea found in relatively high concentrations at sites of coccidioidal infection in the lungs of mice. Direct measurement of the pH at these infection sites revealed an alkaline microenvironment. Disruption of the urease gene of C. posadasii resulted in a marked reduction in the amount of ammonia secreted in vitro by the fungal cells. BALB/c mice challenged intranasally with the mutant strain showed increased survival, a well-organized granulomatous response to infection, and better clearance of the pathogen than animals challenged with either the parental or the reconstituted (revertant) strain. We conclude that ammonia and enzymatically active urease released from spherules during the parasitic cycle of C. posadasii contribute to host tissue damage, which exacerbates the severity of coccidioidal infection and enhances the virulence of this human respiratory pathogen.

22 November 2022 in JCI Insight
Verified
Journal Article
Open access
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AHAmy P. Hsu
Amy P. Hsu
AKAgnieszka Korzeniowska
Agnieszka Korzeniowska
CACynthia C. Aguilar
Cynthia C. Aguilar
JGJingwen Gu
Jingwen Gu
EKEric Karlins
Eric Karlins
SHSteven M. Holland
Steven M. Holland
Disseminated coccidioidomycosis (DCM) is caused by Coccidioides , pathogenic fungi endemic to the southwestern United States and Mexico. Illness occurs in approximately 30% of those infected, less than 1% of whom develop disseminated disease. To address why some individuals allow dissemination, we enrolled patients with DCM and performed whole-exome sequencing. In an exploratory set of 67 patients with DCM, 2 had haploinsufficient STAT3 mutations, and defects in β-glucan sensing and response were seen in 34 of 67 cases. Damaging CLEC7A and PLCG2 variants were associated with impaired production of β-glucan–stimulated TNF-α from PBMCs compared with healthy controls. Using ancestry-matched controls, damaging CLEC7A and PLCG2 variants were overrepresented in DCM, including CLEC7A Y238* and PLCG2 R268W. A validation cohort of 111 patients with DCM confirmed the PLCG2 R268W, CLEC7A I223S, and CLEC7A Y238* variants. Stimulation with a DECTIN-1 agonist induced DUOX1/DUOXA1–derived hydrogen peroxide [H 2 O 2 ] in transfected cells. Heterozygous DUOX1 or DUOXA1 variants that impaired H 2 O 2 production were overrepresented in discovery and validation cohorts. Patients with DCM have impaired β-glucan sensing or response affecting TNF-α and H 2 O 2 production. Impaired Coccidioides recognition and decreased cellular response are associated with disseminated coccidioidomycosis.

1 September 2019 in Emerging Infectious Diseases
Verified
Journal Article
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FDFariba Donovan
Fariba Donovan
PWPatrick Wightman
Patrick Wightman
YZYue Zong
Yue Zong
LGLuke Gabe
Luke Gabe
AMAneela Majeed
Aneela Majeed
JGJohn Natale Galgiani
John Natale Galgiani
Tucson, Arizona, USA, is a highly coccidioidomycosis-endemic area. We conducted a retrospective review of 815 patients in Tucson over 2.7 years. Of 276 patients with coccidioidomycosis, 246 had a delay in diagnosis; median delay was 23 days. Diagnosis delay was associated with coccidioidomycosis-related costs totaling $589,053 and included extensive antibacterial drug use.

20 August 2020 in Clinical Infectious Diseases
Verified
Journal Article
Closed access
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FDFariba Donovan
Fariba Donovan
FRFerris A Ramadan
Ferris A Ramadan
SKSher A Khan
Sher A Khan
ABApoorva Bhaskara
Apoorva Bhaskara
WLWilliam Lainhart
William Lainhart
JGJohn N Galgiani
John N Galgiani
Coccidioidomycosis (CM) is a common cause of community-acquired pneumonia where CM is endemic. Manifestations include self-limited pulmonary infection, chronic fibrocavitary pulmonary disease, and disseminated coccidioidomycosis. Most infections are identified by serological assays including enzyme-linked immunoassay (EIA), complement fixation, and immunodiffusion. These are time-consuming and take days to result, impeding early diagnosis. A new lateral flow assay (LFA; Sōna; IMMY, Norman, OK) improves time-to-result to 1 hour. We prospectively enrolled 392 patients with suspected CM, compared the LFA with standard EIA and included procalcitonin evaluation. Compared with standard EIA, LFA demonstrates 31% sensitivity (95% confidence interval [CI], 20–44%) and 92% specificity (95% CI, 88–95%). Acute pulmonary disease (74%) was the most common clinical syndrome. Hospitalized patients constituted 75% of subjects, and compared with outpatients, they more frequently had ≥3 previous healthcare facility visits (P = .05), received antibacterials (P < .01), and had >3 antibacterial courses (P < .01). Procalcitonin (PCT) was <0.25 ng/mL in 52 (83%) EIA-positive patients, suggesting infection was not bacterial. When CM is a possible diagnosis, LFA identified nearly one-third of EIA-positive infections. Combined with PCT <0.25 ng/mL, LFA could reduce unnecessary antibacterial use by 77%.

1 July 1995 in Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism
Verified
Journal Article
Closed access
FDFariba Donovan
Fariba Donovan
YBYoshiko Banno
Yoshiko Banno
MGMahmoud A. Ghannoum
Mahmoud A. Ghannoum
AIAshraf S. Ibrahim
Ashraf S. Ibrahim
SNShigeru Nakashima
Shigeru Nakashima
YNYoshinori Nozawa
Yoshinori Nozawa