Unmanned aerial vehicles (UAV) based methods for reconnaissance activities aim to update wetlands’ health status and are safer and cost-effective considering that wetlands normally have saturated soils, dense vegetation and wildlife. Vegetation survey work in wetland areas needs many staff to ensure the safety of researchers and equipment. This paper describes the application of UAV technology to identify and demarcate vegetation communities in a dense BRIS (beach ridges interspersed with swales) coastal wetland. The methodology employed in this research has two steps. The first step involves the utilisation of UAV imagery and Geographic Information System (GIS) technology. The second step entails ground truthing, which involves validating tree species using 15 quadrants. The utilisation of UAVs in conjunction with ArcGIS 10.3 demonstrated that the unique characteristics of tree canopy morphology and tree heights could be assessed and analysed. The UAV-GIS results are compared to ground truthing results to validate tree communities’ demarcation. The findings indicate that integrating two datasets, particularly tree canopy morphology and tree height, produced an acceptably accurate vegetation community demarcation. The tree canopy form of Hibiscus tiliaceus (Bebaru) was differentiated from the canopies of Acacia mangium and Nypa fruticans by analysing the image. The tree height analysis involved using ArcGIS 10.3 software to generate the digital surface model (DSM) and digital terrain model (DTM). Validation results indicate an 87% accuracy in the demarcation work. Hence, identification and demarcation of the vegetation communities could be achieved by utilising both tree canopy morphology and tree height data obtained from UAV.