Viruses influence the fate of nutrients and human health by killing microorganisms and altering metabolic processes. Organosulfur metabolism and biologically derived hydrogen sulfide play dynamic roles in manifestation of diseases, infrastructure degradation, and essential biological processes. Although microbial organosulfur metabolism is well studied, the role of viruses in organosulfur metabolism is unknown. Here, we report the discovery of 39 gene families involved in organosulfur metabolism encoded by 3,749 viruses from diverse ecosystems, including human microbiomes. The viruses infect organisms from all three domains of life. Six gene families encode for enzymes that degrade organosulfur compounds into sulfide, whereas others manipulate organosulfur compounds and may influence sulfide production. We show that viral metabolic genes encode key enzymatic domains, are translated into protein, and are maintained after recombination, and sulfide provides a fitness advantage to viruses. Our results reveal viruses as drivers of organosulfur metabolism with important implications for human and environmental health.

The sea-surface microlayer (SML) at the boundary between atmosphere and hydrosphere represents a demanding habitat for bacteria. Wind speed is a crucial but poorly studied factor for its physical integrity. Increasing atmospheric burden of CO₂, as suggested for future climate scenarios, may particularly act on this habitat at the air–sea interface. We investigated the effect of increasing wind speeds and different pCO₂ levels on SML microbial communities in a wind-wave tunnel, which offered the advantage of low spatial and temporal variability. We found that enrichment of bacteria in the SML occurred solely at a U₁₀ wind speed of ≤5.6 m s⁻¹ in the tunnel and ≤4.1 m s⁻¹ in the Baltic Sea. High pCO₂ levels further intensified the bacterial enrichment in the SML during low wind speed. In addition, low wind speed and pCO₂ induced the formation of a distinctive bacterial community as revealed by 16S rRNA gene fingerprints and influenced the presence or absence of individual taxonomic units within the SML. We conclude that physical stability of the SML below a system-specific wind speed threshold induces specific bacterial communities in the SML entailing strong implications for ecosystem functioning by wind-driven impacts on habitat properties, gas exchange and matter cycling processes.

This paper describes a state-of-the-art research catamaran to investigate processes such as air–sea gas exchange, heat exchange, surface blooms, and photochemistry at the sea surface microlayer (SML) with high-resolution measurements of 0.1-Hz frequency. As the boundary layer between the ocean and the atmosphere, the SML covers 70% of Earth. The remote-controlled Sea Surface Scanner is based on a glass disk sampler to automate the sampling of the thin SML, overcoming the disadvantages of techniques such as low volume sampling and ex situ measurement of the SML. A suite of in situ sensors for seven biogeochemical parameters (temperature, pH, dissolved oxygen, salinity, chromophoric dissolved organic matter, chlorophyll-a, and photosynthetic efficiency) was implemented to characterize the SML in reference to the mixed bulk water. The Sea Surface Scanner has the capability to collect 24 discrete water samples with a volume of 1 L each for further laboratory analysis. Meteorological parameters such as wind speed influence SML properties and are continuously monitored. This paper reports the use of the Sea Surface Scanner to identify and study (i) upwelling regions and associated fronts, (ii) rain events, and (iii) the occurrence of surface blooms. The high patchiness of the SML was detected during the observed sea surface phenomena, and high-resolution mapping of the biogeochemical parameters of the oceanic boundary layer to the atmosphere are presented for the first time. The Sea Surface Scanner is a new technology to map and understand sea surface processes and, ultimately, to fill the gaps in knowledge about ocean–atmosphere interactions relevant to ocean and climate science.

Deserts are one of the largest and rapidly expanding terrestrial ecosystems characterized by low biodiversity and biomass. The hyperarid core of the Atacama Desert, previously thought to be devoid of life, is one of the harshest environments, supporting only scant biomass of highly adapted microbes.

The continental subsurface houses a major portion of life’s abundance and diversity, yet little is known about viruses infecting microbes that reside there. Here, we use a combination of metagenomics and virus-targeted direct-geneFISH (virusFISH) to show that highly abundant carbon-fixing organisms of the uncultivated genus Candidatus Altiarchaeum are frequent targets of previously unrecognized viruses in the deep subsurface. Analysis of CRISPR spacer matches display resistances of Ca. Altiarchaea against eight predicted viral clades, which show genomic relatedness across continents but little similarity to previously identified viruses. Based on metagenomic information, we tag and image a putatively viral genome rich in protospacers using fluorescence microscopy. VirusFISH reveals a lytic lifestyle of the respective virus and challenges previous predictions that lysogeny prevails as the dominant viral lifestyle in the subsurface. CRISPR development over time and imaging of 18 samples from one subsurface ecosystem suggest a sophisticated interplay of viral diversification and adapting CRISPR-mediated resistances of Ca. Altiarchaeum. We conclude that infections of primary producers with lytic viruses followed by cell lysis potentially jump-start heterotrophic carbon cycling in these subsurface ecosystems.

Wind, chemical enhancement, phytoplankton activity, and surfactants are potential factors driving the air-sea gas exchange of carbon dioxide (CO₂). We investigated their effects on the gas transfer velocity of CO₂ in a large annular wind-wave tank filled with natural seawater from the North Atlantic Ocean. Experiments were run under 11 different wind speed conditions (ranging from 1.5 ms⁻¹ to 22.8 ms⁻¹), and we increased the water pCO₂ concentration twice by more than 950 μatm for two of the seven experimental days. We develop a conceptual box model that incorporated the thermodynamics of the marine CO₂ system. Surfactant concentrations in the sea surface microlayer (SML) ranged from 301 to 1015 μgL⁻¹ (as Triton X-100 equivalents) with enrichments ranged from 1.0 to 5.7 in comparison to the samples from the underlying bulk water. With wind speeds up to 8.5 ms⁻¹, surfactants in the SML can reduce the gas transfer velocity by 54%. Wind-wave tank experiments in combination with modeling are useful tools for obtaining a better understanding of the gas transfer velocities of CO₂ across the air-sea boundary. The tank allowed for measuring the gas exchange velocity under extreme low and high wind speeds; in contrast, most previous parametrizations have fallen short because measurements of gas exchange velocities in the field are challenging, especially at low wind conditions. High variability in the CO₂ transfer velocities suggests that gas exchange is a complex process not solely controlled by wind forces, especially in low wind conditions.