Muhammad Nadeem Abbas

Dr. Muhammad Nadeem Abbas

State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
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MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
MJMohamed Amine Jmel
Mohamed Amine Jmel
IMImen Mekki
Imen Mekki
IDIngrid Dijkgraaf
Ingrid Dijkgraaf
Michail KotsyfakisMichail Kotsyfakis
Michail Kotsyfakis
Ticks can seriously affect human and animal health around the globe, causing significant economic losses each year. Chemical acaricides are widely used to control ticks, which negatively impact the environment and result in the emergence of acaricide-resistant tick populations. A vaccine is considered as one of the best alternative approaches to control ticks and tick-borne diseases, as it is less expensive and more effective than chemical controls. Many antigen-based vaccines have been developed as a result of current advances in transcriptomics, genomics, and proteomic techniques. A few of these (e.g., Gavac® and TickGARD®) are commercially available and are commonly used in different countries. Furthermore, a significant number of novel antigens are being investigated with the perspective of developing new anti-tick vaccines. However, more research is required to develop new and more efficient antigen-based vaccines, including on assessing the efficiency of various epitopes against different tick species to confirm their cross-reactivity and their high immunogenicity. In this review, we discuss the recent advancements in the development of antigen-based vaccines (traditional and RNA-based) and provide a brief overview of recent discoveries of novel antigens, along with their sources, characteristics, and the methods used to test their efficiency.

1 November 2017 in Developmental & Comparative Immunology
Verified
Journal Article
Closed access
SKSaima Kausar
Saima Kausar
MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
CQCEN QIAN
CEN QIAN
BZBaojian Zhu
Baojian Zhu
YSYu Sun
Yu Sun
CLChaoliang Liu
Chaoliang Liu

11 January 2020 in Genes
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Journal Article
Open access
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SKSaima Kausar
Saima Kausar
LYLiqun Yang
Liqun Yang
MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
Hu XinHu Xin
Hu Xin
Yongju ZhaoYongju Zhao
Yongju Zhao
HCHongjuan Cui
Hongjuan Cui
During the last few years, mitochondrial DNA has attained much attention as a modulator of immune responses. Due to common evolutionary origin, mitochondrial DNA shares various characteristic features with DNA of bacteria, as it consists of a remarkable number of unmethylated DNA as 2′-deoxyribose cytidine-phosphate-guanosine (CpG) islands. Due to this particular feature, mitochondrial DNA seems to be recognized as a pathogen-associated molecular pattern by the innate immune system. Under the normal physiological situation, mitochondrial DNA is enclosed in the double membrane structure of mitochondria. However, upon pathological conditions, it is usually released into the cytoplasm. Growing evidence suggests that this cytosolic mitochondrial DNA induces various innate immune signaling pathways involving NLRP3, toll-like receptor 9, and stimulator of interferon genes (STING) signaling, which participate in triggering downstream cascade and stimulating to produce effector molecules. Mitochondrial DNA is responsible for inflammatory diseases after stress and cellular damage. In addition, it is also involved in the anti-viral and anti-bacterial innate immunity. Thus, instead of entire mitochondrial importance in cellular metabolism and energy production, mitochondrial DNA seems to be essential in triggering innate anti-microbial immunity. Here, we describe existing knowledge on the involvement of mitochondrial DNA in the anti-microbial immunity by modulating the various immune signaling pathways.

12 April 2019 in Cells
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Journal Article
Open access
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MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
SKSaima Kausar
Saima Kausar
FWFeng Wang
Feng Wang
Yongju ZhaoYongju Zhao
Yongju Zhao
HCHongjuan Cui
Hongjuan Cui
Glioma is the most common primary tumor of the nervous system, and approximately 50% of patients exhibit the most aggressive form of the cancer, glioblastoma. The biological function of epidermal growth factor receptor (EGFR) in tumorigenesis and progression has been established in various types of cancers, since it is overexpressed, mutated, or dysregulated. Its overexpression has been shown to be associated with enhanced metastatic potential in glioblastoma, with EGFR at the top of a downstream signaling cascade that controls basic functional properties of glioblastoma cells such as survival, cell proliferation, and migration. Thus, EGFR is considered as an important therapeutic target in glioblastoma. Many anti-EGFR therapies have been investigated both in vivo and in vitro, making their way to clinical studies. However, in clinical trials, the potential efficacy of anti-EGFR therapies is low, primarily because of chemoresistance. Currently, a range of epigenetic drugs including histone deacetylase (HDAC) inhibitors, DNA methylation and histone inhibitors, microRNA, and different types of EGFR inhibitor molecules are being actively investigated in glioblastoma patients as therapeutic strategies. Here, we describe recent knowledge on the signaling pathways mediated by EGFR/EGFR variant III (EGFRvIII) with regard to current therapeutic strategies to target EGFR/EGFRvIII amplified glioblastoma.

1 April 2018 in Developmental & Comparative Immunology
Verified
Journal Article
Closed access
MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
SKSaima Kausar
Saima Kausar
YSYu-Xuan Sun
Yu-Xuan Sun
JTJi Wu Tian
Ji Wu Tian
BZBaojian Zhu
Baojian Zhu
CLChaoliang Liu
Chaoliang Liu

Verified
Journal Article
Open access
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JMJosé María Medina Muñoz
José María Medina Muñoz
MAMuhammad Nadeem Abbas
Muhammad Nadeem Abbas
CBChaima ben BENSAOUD
Chaima ben BENSAOUD
Michael HackenbergMichael Hackenberg
Michael Hackenberg
Michail KotsyfakisMichail Kotsyfakis
Michail Kotsyfakis
Ixodes ricinus ticks are distributed across Europe and are a vector of tick-borne diseases. Although I. ricinus transcriptome studies have focused exclusively on protein coding genes, the last decade witnessed a strong increase in long non-coding RNA (lncRNA) research and characterization. Here, we report for the first time an exhaustive analysis of these non-coding molecules in I. ricinus based on 131 RNA-seq datasets from three different BioProjects. Using this data, we obtained a consensus set of lncRNAs and showed that lncRNA expression is stable among different studies. While the length distribution of lncRNAs from the individual data sets is biased toward short length values, implying the existence of technical artefacts, the consensus lncRNAs show a more homogeneous distribution emphasizing the importance to incorporate data from different sources to generate a solid reference set of lncRNAs. KEGG enrichment analysis of host miRNAs putatively targeting lncRNAs upregulated upon feeding showed that these miRNAs are involved in several relevant functions for the tick-host interaction. The possibility that at least some tick lncRNAs act as host miRNA sponges was further explored by identifying lncRNAs with many target regions for a given host miRNA or sets of host miRNAs that consistently target lncRNAs together. Overall, our findings suggest that lncRNAs that may act as sponges have diverse biological roles related to the tick–host interaction in different tissues.