Aim  The study of biological invasions has long considered species invasiveness and community invasibility as separate questions. Only recently, there is an increasing recognition that integrating these two questions offers new insights into the mechanisms of biological invasions. This recognition has renewed the interest in two long‐standing and seemingly contradictory hypotheses proposed by Darwin: phylogenetic relatedness of invaders to native communities is predicted to promote naturalization because of appropriate niche‐adaptation but is at the same time predicted to hamper naturalization because of niche overlap with native species. The latter is known as Darwin’s naturalization hypothesis.Location  Global.Methods and Results  We review the studies that have tested these hypotheses and summarize their largely inconsistent outcomes. We argue that most of the inconsistency arises from discrepancies in the applied conceptual frameworks and analytical approaches and not from different model organisms and different ecological contexts. First, observed patterns and results can be seriously flawed by different spatial and phylogenetic scales, which do not equally reveal community assembly mechanisms. Second, different studies have used different metrics, which may test for different specific hypotheses. Thus, we propose a set of metrics derived from the alpha niche concept to measure invaders relatedness to native communities. Finally, approximating species niche differentiation from phylogenetic relatedness is not exempt of assumptions, and invasive species naturalization may result from various ecological mechanisms of biotic resistance that are not necessarily revealed by species phylogeny alone.Main conclusions  The quest for resolving the conundrum of Darwin’s naturalization hypothesis will only be successful if appropriate scales, metrics and analytical tests are thoroughly considered. We give several recommendations and suggest, whenever possible, to use trait‐based measurements of species dissimilarity as the most promising avenue to unravel the mechanisms driving alien species invasions.

Aim: The origins of ecological diversity in continental species assemblages have long intrigued biogeographers. We apply phylogenetic comparative analyses to disentangle the evolutionary patterns of ecological niches in an assemblage ofEuropean birds. We compare phylogenetic patterns in trophic, habitat and climatic niche components.Location: Europe.Methods: From polygon range maps and handbook data we inferred the realized climatic, habitat and trophic niches of 405 species of breeding birds inEurope. We fittedPagel's lambda and kappa statistics, and conducted analyses of disparity through time to compare temporal patterns of ecological diversification on all niche axes together. All observed patterns were compared with expectations based on neutral (Brownian) models of niche divergence.Results: In this assemblage, patterns of phylogenetic signal (lambda) suggest that related species resemble each other less in regard to their climatic and habitat niches than they do in their trophic niche. Kappa estimates show that ecological divergence does not gradually increase with divergence time, and that this punctualism is stronger in climatic niches than in habitat and trophic niches. Observed niche disparity markedly exceeds levels expected from a Brownian model of ecological diversification, thus providing no evidence for past phylogenetic niche conservatism in these multivariate niches. Levels of multivariate disparity are greatest for the climatic niche, followed by disparity of the habitat and the trophic niches.Main conclusions: Phylogenetic patterns in the three niche components differ within this avian assemblage. Variation in evolutionary rates (degree of gradualism, constancy through the tree) and/or non‐random macroecological sampling probably lead here to differences in the phylogenetic structure of niche components. Testing hypotheses on the origin of these patterns requires more complete phylogenetic trees of the birds, and extended ecological data on different niche components for all bird species.

Genome skimming has the potential for generating large data sets for DNA barcoding and wider biodiversity genomic studies, particularly via the assembly and annotation of full chloroplast (cpDNA) and nuclear ribosomal DNA (nrDNA) sequences. We compare the success of genome skims of 2051 herbarium specimens from Norway/Polar regions with 4604 freshly collected, silica gel dried specimens mainly from the European Alps and the Carpathians. Overall, we were able to assemble the full chloroplast genome for 67% of the samples and the full nrDNA cluster for 86%. Average insert length, cover and full cpDNA and rDNA assembly were considerably higher for silica gel dried than herbarium-preserved material. However, complete plastid genomes were still assembled for 54% of herbarium samples compared to 70% of silica dried samples. Moreover, there was comparable recovery of coding genes from both tissue sources (121 for silica gel dried and 118 for herbarium material) and only minor differences in assembly success of standard barcodes between silica dried (89% ITS2, 96% matK and rbcL) and herbarium material (87% ITS2, 98% matK and rbcL). The success rate was > 90% for all three markers in 1034 of 1036 genera in 160 families, and only Boraginaceae worked poorly, with 7 genera failing. Our study shows that large-scale genome skims are feasible and work well across most of the land plant families and genera we tested, independently of material type. It is therefore an efficient method for increasing the availability of plant biodiversity genomic data to support a multitude of downstream applications.