Zhen Yu

Dr. Zhen Yu

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 August 2024 in Foods
Verified
Journal Article
Open access
PDF file
DHDong Han
Dong Han
YYYunsong Yang
Yunsong Yang
ZGZhantong Guo
Zhantong Guo
SDShuwen Dai
Shuwen Dai
MJMingchao Jiang
Mingchao Jiang
YYYongjian Yu
Yongjian Yu
In fermented foods, acetic acid bacteria (AAB), kinds of bacteria with a long history of utilization, contribute to safety, nutritional, and sensory properties primarily through acetic acid fermentation. AAB are commonly found in various fermented foods such as vinegar, sour beer, fermented cocoa and coffee beans, kefir beverages, kombucha, and sourdough. They interact and cooperate with a variety of microorganisms, resulting in the formation of diverse metabolites and the production of fermented foods with distinct flavors. Understanding the interactions between AAB and other microbes is crucial for effectively controlling and utilizing AAB in fermentation processes. However, these microbial interactions are influenced by factors such as strain type, nutritional conditions, ecological niches, and fermentation duration. In this review, we examine the relationships and research methodologies of microbial interactions and interaction studies between AAB and yeasts, lactic acid bacteria (LAB), and bacilli in different food fermentation processes involving these microorganisms. The objective of this review is to identify key interaction models involving AAB and other microorganisms. The insights gained will provide scientific guidance for the effective utilization of AAB as functional microorganisms in food fermentation processes.

21 October 2022 in Foods
Verified
Journal Article
Open access
PDF file
ZYZhen Yu
Zhen Yu
YMYan Ma
Yan Ma
YGYingfen Guan
Yingfen Guan
YZYuanyuan Zhu
Yuanyuan Zhu
KWKe Wang
Ke Wang
YYYongjian Yu
Yongjian Yu
Traditional Chinese vinegar offers an exceptional flavor and rich nutrients due to its unique solid-state fermentation process, which is a multiple microbial fermentation system including various bacteria, fungi and viruses. However, few studies on the virus diversities in traditional Chinese vinegar have been reported. In this paper, using Zhenjiang aromatic vinegar as a model system, we systemically explored the viral communities in the solid-state brewing process of traditional Chinese vinegar using bacterial and viral metagenomes. Results showed that the viral diversity in vinegar Pei was extensive and the virus communities varied along with the fermentation process. In addition, there existed some interactions between viral and bacterial communities. Moreover, abundant antibiotic resistance genes were found in viromes, indicating that viruses might protect fermentation bacteria strains from the stress of antibiotics in the fermentation environment. Remarkably, we identified abundant auxiliary carbohydrate metabolic genes (including alcohol oxidases, the key enzymes for acetic acid synthesis) from viromes, implying that viruses might participate in the acetic acid synthesis progress of the host through auxiliary metabolic genes. Taken together, our results indicated the potential roles of viruses in the vinegar brewing process and provided a new perspective for studying the fermentation mechanisms of traditional Chinese vinegar.

11 January 2023 in Fermentation
Verified
Journal Article
Open access
PDF file
YZYuanyuan Zhu
Yuanyuan Zhu
RTRuijun Tang
Ruijun Tang
YYYongjian Yu
Yongjian Yu
ZYZhen Yu
Zhen Yu
KWKe Wang
Ke Wang
DHDong Han
Dong Han
A new biphasic organic solvent, phenoxyethanol-maleic acid, was carried out to pretreat and fractionate vinegar residue into glucan, xylan and lignin under mild conditions. Additional effects of key factors, temperature and phenoxyethanol concentration, on vinegar residue, were evaluated. Under the biphasic system (0.5% maleic acid, 60% phenoxyethanol), 140 °C cooking vinegar residue for 1 h, 80.91% of cellulose retention in solid residue, 75.44% of hemicellulose removal and 69.28% of lignin removal were obtained. Optimal identified conditions resulted in maximum XOS of 47.3%. Then, the solid residue was enzymatically digested with a glucose yield of 82.67% at 72 h with the addition of 2.5 g/L bovine serum albumin. Finally, the residue was characterized by SEM, FTIR, XRD and BET analysis. This work demonstrated the phenoxyethanol-maleic acid pretreatment yielded XOS, fermentable sugar, and lignin with high processibility.

18 October 2022 in Foods
Verified
Journal Article
Open access
PDF file
KWKe Wang
Ke Wang
YYYongjian Yu
Yongjian Yu
SLShuangping Liu
Shuangping Liu
YZYuanyuan Zhu
Yuanyuan Zhu
PLPeng Liu
Peng Liu
YWYuqin Wang
Yuqin Wang
Vinegar residue (VR) is a typical organic solid waste in Chinese cereal vinegar production. It is characterized by high yield, high moisture and low pH and is rich in lignocellulose and other organic matter. To avoid the environmental pollution caused by VR, it should be properly treated. The industry’s existing treatment processes, landfills and incineration, cause secondary pollution and waste of resources. Therefore, there is an urgent demand for environmentally friendly and cost-effective resource recovery technologies for VR. To date, a considerable amount of research has been performed in the area of resource recovery technologies for VR. This review summarizes the reported resource recovery technologies, mainly anaerobic digestion, feed production, fertilizer production, high-value product production and soil/water remediation. The principles, advantages and challenges of these technologies are highlighted. Finally, as a future perspective, a cascade and full utilization model for VR is proposed by considering the inherent drawbacks and economic-environmental feasibility of these technologies.

20 November 2025 in Journal of Hazardous Materials
Verified
Journal Article
Closed access
YLYan Li
Yan Li
ZYZhen Yu
Zhen Yu
YCYifan Cui
Yifan Cui
SKSadaf-Ilyas Kayani
Sadaf-Ilyas Kayani
XXXianhui Xue
Xianhui Xue
SHShuhao Huo
Shuhao Huo

3 September 2025 in Foods
Verified
Journal Article
Open access
PDF file
ZYZhen Yu
Zhen Yu
HZHuizi Zhao
Huizi Zhao
TMTingting Ma
Tingting Ma
XZXujiao Zhang
Xujiao Zhang
YYYufeng Yan
Yufeng Yan
YYYongjian Yu
Yongjian Yu
Viruses play a regulatory role in microbial ecology. Traditional fermented foods have complex fermentation environments with abundant viral participation, yet current research on viral communities in fermented foods remains insufficient. Traditional, manually produced solid-state fermented vinegar serves as an excellent model for studying the role of viral communities in fermented foods. Using metagenomic approaches, this study investigates the structure and dynamics of viral communities during the acetic acid fermentation process of Shanxi aged vinegar. All identified viruses were bacteriophages, and the dominant families were identified as Herelleviridae, Autographiviridae, and Stanwilliamsviridae. The richness and diversity of viral communities exhibited significant variations during acetic acid fermentation. Furthermore, correlation analysis revealed a strong association (p < 0.01) between core bacteria and core viruses. Functional annotation revealed the presence of viral genes associated with amino acid and carbohydrate metabolism. Notably, abundant auxiliary carbohydrate-active enzyme (CAZyme) genes were identified in viruses, with glycoside hydrolases (GHs), glycosyltransferases (GTs), and carbohydrate-binding modules (CBMs) demonstrating particularly high abundance. Additionally, several antibiotic resistance genes were detected in viruses. This study elucidates the impact of viral communities on microbial dynamics during food fermentation, advancing our understanding of viral roles in traditional fermented food ecosystems.