Ilyas Chachoua

Dr. Ilyas Chachoua

Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey
orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
10 March 2016 in Blood
Verified
Journal Article
Closed access
PDF file
ICIlyas Chachoua
Ilyas Chachoua
CPChristian Pecquet
Christian Pecquet
MEMira El-Khoury
Mira El-Khoury
HNHarini Nivarthi
Harini Nivarthi
RARoxana-Irina Albu
Roxana-Irina Albu
SCStefan N. Constantinescu
Stefan N. Constantinescu
Mutations in the calreticulin gene (CALR) represented by deletions and insertions in exon 9 inducing a −1/+2 frameshift are associated with a significant fraction of myeloproliferative neoplasms (MPNs). The mechanisms by which CALR mutants induce MPN are unknown. Here, we show by transcriptional, proliferation, biochemical, and primary cell assays that the pathogenic CALR mutants specifically activate the thrombopoietin receptor (TpoR/MPL). No activation is detected with a battery of type I and II cytokine receptors, except granulocyte colony-stimulating factor receptor, which supported only transient and weak activation. CALR mutants induce ligand-independent activation of JAK2/STAT/phosphatydylinositol-3′-kinase (PI3-K) and mitogen-activated protein (MAP) kinase pathways via TpoR, and autonomous growth in Ba/F3 cells. In these transformed cells, no synergy is observed between JAK2 and PI3-K inhibitors in inhibiting cytokine-independent proliferation, thus showing a major difference from JAK2V617F cells where such synergy is strong. TpoR activation was dependent on its extracellular domain and its N-glycosylation, especially at N117. The glycan binding site and the novel C-terminal tail of the mutant CALR proteins were required for TpoR activation. A soluble form of TpoR was able to prevent activation of full-length TpoR provided that it was N-glycosylated. By confocal microscopy and subcellular fractionation, CALR mutants exhibit different intracellular localization from that of wild-type CALR. Finally, knocking down either MPL/TpoR or JAK2 in megakaryocytic progenitors from patients carrying CALR mutations inhibited cytokine-independent megakaryocytic colony formation. Taken together, our study provides a novel signaling paradigm, whereby a mutated chaperone constitutively activates cytokine receptor signaling. Publisher9s Note: There is an Inside Blood Commentary on this article in this issue. Key Points Calreticulin mutants responsible for myeloproliferative neoplasms specifically activate the thrombopoietin receptor and in turn JAK2. Activation of the thrombopoietin receptor requires the glycan binding site and a novel C-terminal tail of the mutant calreticulin.

21 January 2016 in Blood
Verified
Journal Article
Open access
PDF file
JFJelena Milosevic Feenstra
Jelena Milosevic Feenstra
HNHarini Nivarthi
Harini Nivarthi
HGHeinz Gisslinger
Heinz Gisslinger
ELEmilie Leroy
Emilie Leroy
ERElisa Rumi
Elisa Rumi
RKRobert Kralovics
Robert Kralovics
Key Points: Activating mutations outside exon 10 of MPL were identified in 10% (7 of 69) of triple-negative cases of ET and PMF. JAK2-V625F and JAK2-F556V were identified in 2 triple-negative cases of ET and were shown to activate JAK-STAT5 signaling.

10 March 2016 in Blood
Verified
Journal Article
Closed access
PDF file
CMCaroline Marty
Caroline Marty
CPChristian Pecquet
Christian Pecquet
HNHarini Nivarthi
Harini Nivarthi
MEMira El-Khoury
Mira El-Khoury
ICIlyas Chachoua
Ilyas Chachoua
WVWilliam Vainchenker
William Vainchenker
Frameshift mutations in the calreticulin (CALR) gene are seen in about 30% of essential thrombocythemia and myelofibrosis patients. To address the contribution of the CALR mutants to the pathogenesis of myeloproliferative neoplasms, we engrafted lethally irradiated recipient mice with bone marrow cells transduced with retroviruses expressing these mutants. In contrast to wild-type CALR, CALRdel52 (type I) and, to a lesser extent, CALRins5 (type II) induced thrombocytosis due to a megakaryocyte (MK) hyperplasia. Disease was transplantable into secondary recipients. After 6 months, CALRdel52-, in contrast to rare CALRins5-, transduced mice developed a myelofibrosis associated with a splenomegaly and a marked osteosclerosis. Monitoring of virus-transduced populations indicated that CALRdel52 leads to expansion at earlier stages of hematopoiesis than CALRins5. However, both mutants still specifically amplified the MK lineage and platelet production. Moreover, a mutant deleted of the entire exon 9 (CALRdelex9) did not induce a disease, suggesting that the oncogenic property of CALR mutants was related to the new C-terminus peptide. To understand how the CALR mutants target the MK lineage, we used a cell-line model and demonstrated that the CALR mutants, but not CALRdelex9, specifically activate the thrombopoietin (TPO) receptor (MPL) to induce constitutive activation of Janus kinase 2 and signal transducer and activator of transcription 5/3/1. We confirmed in c-mpl– and tpo-deficient mice that expression of Mpl, but not of Tpo, was essential for the CALR mutants to induce thrombocytosis in vivo, although Tpo contributes to disease penetrance. Thus, CALR mutants are sufficient to induce thrombocytosis through MPL activation. Publisher9s Note: There is an Inside Blood Commentary on this article in this issue. Key Points Calreticulin type I and type II mutants are drivers of the disease as they induce thrombocytosis in a retroviral mouse model. Thrombopoietin receptor MPL is required for calreticulin mutants to induce an essential thrombocythemia phenotype in transplanted mice.

21 January 2016 in Blood
Verified
Journal Article
Closed access
PDF file
XCXénia Cabagnols
Xénia Cabagnols
FFFabrizia Favale
Fabrizia Favale
FPFlorence Pasquier
Florence Pasquier
KMKahia Messaoudi
Kahia Messaoudi
JDJean Philippe Defour
Jean Philippe Defour
WVWilliam Vainchenker
William Vainchenker
Mutations in signaling molecules of the cytokine receptor axis play a central role in myeloproliferative neoplasm (MPN) pathogenesis. Polycythemia vera is mainly related to JAK2 mutations, whereas a wider mutational spectrum is detected in essential thrombocythemia (ET) with mutations in JAK2, the thrombopoietin (TPO) receptor (MPL), and the calreticulin (CALR) genes. Here, we studied the mutational profile of 17 ET patients negative for JAK2V617F, MPLW515K/L, and CALR mutations, using whole-exome sequencing and next-generation sequencing (NGS) targeted on JAK2 and MPL. We found several signaling mutations including JAK2V617F at very low allele frequency, 1 homozygous SH2B3 mutation, 1 MPLS505N, 1 MPLW515R, and 2 MPLS204P mutations. In the remaining patients, 4 presented a clonal and 7 a polyclonal hematopoiesis, suggesting that certain triple-negative ETs are not MPNs. NGS on 26 additional triple-negative ETs detected only 1 MPLY591N mutation. Functional studies on MPLS204P and MPLY591N revealed that they are weak gain-of-function mutants increasing MPL signaling and conferring either TPO hypersensitivity or independence to expressing cells, but with a low efficiency. Further studies should be performed to precisely determine the frequency of MPLS204 and MPLY591 mutants in a bigger cohort of MPN. Publisher9s Note: There is an Inside Blood Commentary on this article in this issue. Key Points Enrichment of atypical MPL mutations in essential thrombocythemia. MPLS204P and MPLY591N mutants are weak gain-of-function mutants.

29 November 2019 in Nature Genetics
Verified
Journal Article
Closed access
PDF file
BSBarbara A. Scholz
Barbara A. Scholz
NSNoriyuki Sumida
Noriyuki Sumida
CLCarolina Diettrich Mallet de Lima
Carolina Diettrich Mallet de Lima
ICIlyas Chachoua
Ilyas Chachoua
MMMirco Martino
Mirco Martino
RORolf Ohlsson
Rolf Ohlsson

20 June 2019 in Blood
Verified
Journal Article
Closed access
PDF file
CPChristian Pecquet
Christian Pecquet
ICIlyas Chachoua
Ilyas Chachoua
ARAnita Roy
Anita Roy
TBThomas Balligand
Thomas Balligand
GVGaëlle Vertenoeil
Gaëlle Vertenoeil
SCStefan N. Constantinescu
Stefan N. Constantinescu
Calreticulin (CALR) +1 frameshift mutations in exon 9 are prevalent in myeloproliferative neoplasms. Mutant CALRs possess a new C-terminal sequence rich in positively charged amino acids, leading to activation of the thrombopoietin receptor (TpoR/MPL). We show that the new sequence endows the mutant CALR with rogue chaperone activity, stabilizing a dimeric state and transporting TpoR and mutants thereof to the cell-surface in states that would not pass quality control, and this function is absolutely required for oncogenic transformation. Mutant CALRs determine traffic via the secretory pathway of partially immature TpoR, as they protect N117-linked glycans from further processing in the Golgi. A number of engineered or disease-associated TpoRs, such as TpoR/MPL R102P, which causes congenital thrombocytopenia are rescued for traffic and function by mutant CALRs, which can also overcome endoplasmic reticulum retention signals on TpoR. Besides requiring N-glycosylation of TpoR, mutant CALRs require a hydrophobic patch located in the extracellular domain of TpoR to induce TpoR thermal stability and initial intracellular activation, while full activation requires cell surface localization of TpoR. Thus, mutant CALRs are rogue chaperones for TpoR and traffic-defective TpoR mutants, a function required for the oncogenic effects. Key points CALR mutants rescue cell surface localization of traffic deficient TpoR including R102P that causes congenital thrombocytopenia. Oncogenic TpoR activation by CALR mutants requires interaction, stabilization and cell surface localization of the TpoR-CALR complex.