Masato Yoshimura

Dr. Masato Yoshimura

National Synchrotron Radiation Research Center, Hsinchu, Taiwan
orcid

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 July 2003 in Physical Review Letters
Verified
Journal Article
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TNT. Nakano
T. Nakano
DAD. S. Ahn
D. S. Ahn
JAJ. K. Ahn
J. K. Ahn
HAH. Akimune
H. Akimune
YAY. Asano
Y. Asano
RZR. G. T. Zegers
R. G. T. Zegers
The γn→K+K−n reaction on C12 has been studied by measuring both K+ and K− at forward angles. A sharp baryon resonance peak was observed at 1.54±0.01  GeV/c2 with a width smaller than 25  MeV/c2 and a Gaussian significance of 4.6σ. The strangeness quantum number (S) of the baryon resonance is +1. It can be interpreted as a molecular meson-baryon resonance or alternatively as an exotic five-quark state (uudds¯) that decays into a K+ and a neutron. The resonance is consistent with the lowest member of an antidecuplet of baryons predicted by the chiral soliton model.

15 April 2008 in Proceedings of the National Academy of Sciences
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SSSe-Young Son
Se-Young Son
JMJichun Ma
Jichun Ma
YKYouhei Kondou
Youhei Kondou
MYMasato Yoshimura
Masato Yoshimura
EYEiki Yamashita
Eiki Yamashita
TTTomitake Tsukihara
Tomitake Tsukihara
The mitochondrial outer membrane-anchored monoamine oxidase (MAO) is a biochemically important flavoenzyme that catalyzes the deamination of biogenic and xenobiotic amines. Its two subtypes, MAOA and MAOB, are linked to several psychiatric disorders and therefore are interesting targets for drug design. To understand the relationship between structure and function of this enzyme, we extended our previous low-resolution rat MAOA structure to the high-resolution wild-type and G110A mutant human MAOA structures at 2.2 and 2.17 Å, respectively. The high-resolution MAOA structures are similar to those of rat MAOA and human MAOB, but different from the known structure of human MAOA [De Colibus L, et al. (2005) Proc Natl Acad Sci USA 102:12684–12689], specifically regarding residues 108–118 and 210–216, which surround the substrate/inhibitor cavity. The results confirm that the inhibitor selectivity of MAOA and MAOB is caused by the structural differences arising from Ile-335 in MAOA vs. Tyr-326 in MAOB. The structures exhibit a C-terminal transmembrane helix with clear electron density, as is also seen in rat MAOA. Mutations on one residue of loop 108–118, G110, which is far from the active center but close to the membrane surface, cause the solubilized enzyme to undergo a dramatic drop in activity, but have less effect when the enzyme is anchored in the membrane. These results suggest that the flexibility of loop 108–118, facilitated by anchoring the enzyme into the membrane, is essential for controlling substrate access to the active site. We report on the observation of the structure–function relationship between a transmembrane helical anchor and an extra-membrane domain.

4 August 2009 in Proceedings of the National Academy of Sciences
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TYTetsuo Yamashita
Tetsuo Yamashita
YMYoshio Mori
Yoshio Mori
NMNaoyuki Miyazaki
Naoyuki Miyazaki
RCR. Holland Cheng
R. Holland Cheng
MYMasato Yoshimura
Masato Yoshimura
YMYoshiharu Matsuura
Yoshiharu Matsuura
Hepatitis E virus (HEV) is a causative agent of acute hepatitis. The crystal structure of HEV-like particles (HEV-LP) consisting of capsid protein was determined at 3.5-Å resolution. The capsid protein exhibited a quite different folding at the protruding and middle domains from the members of the families of Caliciviridae and Tombusviridae , while the shell domain shared the common folding. Tyr-288 at the 5-fold axis plays key roles in the assembly of HEV-LP, and aromatic amino acid residues are well conserved among the structurally related viruses. Mutational analyses indicated that the protruding domain is involved in the binding to the cells susceptive to HEV infection and has some neutralization epitopes. These structural and biological findings are important for understanding the molecular mechanisms of assembly and entry of HEV and also provide clues in the development of preventive and prophylactic measures for hepatitis E.

1 April 2004 in Journal of Molecular Biology
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Journal Article
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JMJichun Ma
Jichun Ma
MYMasato Yoshimura
Masato Yoshimura
EYEiki Yamashita
Eiki Yamashita
ANAtsushi Nakagawa
Atsushi Nakagawa
AIAkio Ito
Akio Ito
TTTomitake Tsukihara
Tomitake Tsukihara

16 January 2009 in Science
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HTHideaki Tanaka
Hideaki Tanaka
KKKoji Kato
Koji Kato
EYEiki Yamashita
Eiki Yamashita
TSTomoyuki Sumizawa
Tomoyuki Sumizawa
YZYong Zhou
Yong Zhou
TTTomitake Tsukihara
Tomitake Tsukihara
Vaults are among the largest cytoplasmic ribonucleoprotein particles and are found in numerous eukaryotic species. Roles in multidrug resistance and innate immunity have been suggested, but the cellular function remains unclear. We have determined the x-ray structure of rat liver vault at 3.5 angstrom resolution and show that the cage structure consists of a dimer of half-vaults, with each half-vault comprising 39 identical major vault protein (MVP) chains. Each MVP monomer folds into 12 domains: nine structural repeat domains, a shoulder domain, a cap-helix domain, and a cap-ring domain. Interactions between the 42-turn-long cap-helix domains are key to stabilizing the particle. The shoulder domain is structurally similar to a core domain of stomatin, a lipid-raft component in erythrocytes and epithelial cells.

22 October 2015 in PLOS Pathogens
Verified
Journal Article
Open access
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NCNai-Chi Chen
Nai-Chi Chen
MYMasato Yoshimura
Masato Yoshimura
HGHong-Hsiang Guan
Hong-Hsiang Guan
TWTing-Yu Wang
Ting-Yu Wang
YMYuko Misumi
Yuko Misumi
CCChun-Jung Chen
Chun-Jung Chen
Betanodaviruses cause massive mortality in marine fish species with viral nervous necrosis. The structure of a T = 3 Grouper nervous necrosis virus-like particle (GNNV-LP) is determined by the ab initio method with non-crystallographic symmetry averaging at 3.6 Å resolution. Each capsid protein (CP) shows three major domains: (i) the N-terminal arm, an inter-subunit extension at the inner surface; (ii) the shell domain (S-domain), a jelly-roll structure; and (iii) the protrusion domain (P-domain) formed by three-fold trimeric protrusions. In addition, we have determined structures of the T = 1 subviral particles (SVPs) of (i) the delta-P-domain mutant (residues 35−217) at 3.1 Å resolution; and (ii) the N-ARM deletion mutant (residues 35−338) at 7 Å resolution; and (iii) the structure of the individual P-domain (residues 214−338) at 1.2 Å resolution. The P-domain reveals a novel DxD motif asymmetrically coordinating two Ca2+ ions, and seems to play a prominent role in the calcium-mediated trimerization of the GNNV CPs during the initial capsid assembly process. The flexible N-ARM (N-terminal arginine-rich motif) appears to serve as a molecular switch for T = 1 or T = 3 assembly. Finally, we find that polyethylene glycol, which is incorporated into the P-domain during the crystallization process, enhances GNNV infection. The present structural studies together with the biological assays enhance our understanding of the role of the P-domain of GNNV in the capsid assembly and viral infection by this betanodavirus. Betanodaviruses belong to the family Nodaviridae and cause the mortality of numerous larval-stage fish species. Here we report protein crystal structures of a piscine betanodavirus, the Grouper nervous necrosis virus (GNNV), in four different forms. Highlights are two structural features that contribute to the viral molecular mechanisms of the T = 3 and T = 1 capsid assembly: a calcium-associated protrusion domain and a functional arginine-rich motif. These results also shed insights into the structural basis for evolutionary lineage of the family Nodaviridae.