Yaqi Wu

Prof. Yaqi Wu

University of Illinois at Chicago, Chicago, Illinois, USA
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 October 2022 in Fermentation
Verified
Journal Article
Open access
PDF file
CGCheng Guo
Cheng Guo
YWYaqi Wu
Yaqi Wu
SLShengli Li
Shengli Li
ZCZhijun Cao
Zhijun Cao
YWYajing Wang
Yajing Wang
XXXiaofeng Xu
Xiaofeng Xu
Forages are vital in maintaining the dietary structures of ruminants, and reducing their costs is important for improving dairy production efficiency. Thus, this study investigated the effects of dietary forage types on dry matter intake, production, rumen fermentation, and the microbial profile in peak-lactating cows. Eight cows (600 ± 25 kg) with days in milk (60 ± 10 days) were assigned to four groups using a replicated 4 × 4 Latin square design: OG (oat hay + alfalfa hay + corn silage + concentrate), CW (Leymus chinensis + alfalfa hay + corn silage + concentrate), AS (alfalfa silage + oat hay + corn silage + concentrate), and AC (alkali-treated corn straw + alfalfa hay + corn silage + concentrate). The ruminal butyrate acid concentration was lower in the OG group than in the AS and AC groups post-feeding (12 h; p < 0.05). Ruminal NH3-N content was higher in the AS group than in the AC and CW groups post-feeding (9 h; p < 0.05). The percentage of ruminal Oscillospira and unknown microbes was higher in the CW group than in the other groups (p < 0.05). The total rumination time and rumination time per dry matter intake of AC were significantly higher than those of the other groups (p < 0.05). Milk lactose content in the AS group was highest among the groups (p < 0.05), and milk fat content was higher in the OG group than in the CW group (all p < 0.05). Overall, our results suggested that the butyrate acid content of forage from oat hay in rumen fermentation was significantly lower than that of calcium oxide and alfalfa silage sources when the dietary nutrition level was similar. The diet derived from L. chinensis increased the number of fibrillation helices related to fiber-decomposing bacteria and simultaneously increased unknown strains. Forage derived from alfalfa silage tended to increase milk protein levels. Alkali-treated corn straw could significantly increase the total rumination time and unit dry matter rumination time of dairy cows, which plays an important role in maintaining rumen health. The rational use of low-quality forage has broad prospects in China.

2 February 2024 in Clinical Cancer Research
Verified
Journal Article
Open access
PDF file
JVJordan E. Vellky
Jordan E. Vellky
BKBrenna J. Kirkpatrick
Brenna J. Kirkpatrick
LGLisa C. Gutgesell
Lisa C. Gutgesell
MMMathias Morales
Mathias Morales
RBRyan M. Brown
Ryan M. Brown
Natalie ReizineNatalie Reizine
Natalie Reizine
Purpose: Despite successful clinical management of castration-sensitive prostate cancer (CSPC), the 5-year survival rate for men with castration-resistant prostate cancer is only 32%. Combination treatment strategies to prevent disease recurrence are increasing, albeit in biomarker-unselected patients. Identifying a biomarker in CSPC to stratify patients who will progress on standard-of-care therapy could guide therapeutic strategies. Experimental Design: Targeted deep sequencing was performed for the University of Illinois (UI) cohort (n = 30), and immunostaining was performed on a patient tissue microarray (n = 149). Bioinformatic analyses identified pathways associated with biomarker overexpression (OE) in the UI cohort, consolidated RNA sequencing samples accessed from Database of Genotypes and Phenotypes (n = 664), and GSE209954 (n = 68). Neutralizing antibody patritumab and ectopic HER3 OE were utilized for functional mechanistic experiments. Results: We identified ERBB3 OE in diverse patient populations with CSPC, where it was associated with advanced disease at diagnosis. Bioinformatic analyses showed a positive correlation between ERBB3 expression and the androgen response pathway despite low dihydrotestosterone and stable expression of androgen receptor (AR) transcript in Black/African American men. At the protein level, HER3 expression was negatively correlated with intraprostatic androgen in Black/African American men. Mechanistically, HER3 promoted enzalutamide resistance in prostate cancer cell line models and HER3-targeted therapy resensitized therapy-resistant prostate cancer cell lines to enzalutamide. Conclusions: In diverse patient populations with CSPC, ERBB3 OE was associated with high AR signaling despite low intraprostatic androgen. Mechanistic studies demonstrated a direct link between HER3 and enzalutamide resistance. ERBB3 OE as a biomarker could thus stratify patients for intensification of therapy in castration-sensitive disease, including targeting HER3 directly to improve sensitivity to AR-targeted therapies.

15 April 2024
Verified
Other
Open access
PDF file
JVJordan E. Vellky
Jordan E. Vellky
BKBrenna J. Kirkpatrick
Brenna J. Kirkpatrick
LGLisa C. Gutgesell
Lisa C. Gutgesell
MMMathias Morales
Mathias Morales
RBRyan M. Brown
Ryan M. Brown
Natalie ReizineNatalie Reizine
Natalie Reizine
Supplemental Table 2. Prevalence of Black/AA/AFR Patients in Consolidated RNA-seq Datasets.

15 April 2024
Verified
Other
Open access
PDF file
JVJordan E. Vellky
Jordan E. Vellky
BKBrenna J. Kirkpatrick
Brenna J. Kirkpatrick
LGLisa C. Gutgesell
Lisa C. Gutgesell
MMMathias Morales
Mathias Morales
RBRyan M. Brown
Ryan M. Brown
Natalie ReizineNatalie Reizine
Natalie Reizine
Supplemental Table 1. Self-reported Race vs. Ancestry Admixture.

15 April 2024
Verified
Other
Open access
PDF file
JVJordan E. Vellky
Jordan E. Vellky
BKBrenna J. Kirkpatrick
Brenna J. Kirkpatrick
LGLisa C. Gutgesell
Lisa C. Gutgesell
MMMathias Morales
Mathias Morales
RBRyan M. Brown
Ryan M. Brown
Natalie ReizineNatalie Reizine
Natalie Reizine
Supplemental Figure 3: ERBB3 Expression and Preliminary Clinical Outcomes.

15 April 2024
Verified
Other
Open access
PDF file
JVJordan E. Vellky
Jordan E. Vellky
BKBrenna J. Kirkpatrick
Brenna J. Kirkpatrick
LGLisa C. Gutgesell
Lisa C. Gutgesell
MMMathias Morales
Mathias Morales
RBRyan M. Brown
Ryan M. Brown
Natalie ReizineNatalie Reizine
Natalie Reizine
Supplemental Table 2. Prevalence of Black/AA/AFR Patients in Consolidated RNA-seq Datasets.