XingFu Yan

Prof. Dr. XingFu Yan


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 October 2022 in Frontiers in Microbiology
Verified
Journal Article
Open access
PKPeng Kang
Peng Kang
YPYaqing Pan
Yaqing Pan
PYPan Yang
Pan Yang
JHJinpeng Hu
Jinpeng Hu
TZTongli Zhao
Tongli Zhao
XYXingFu Yan
XingFu Yan
Soil microbes act as “players” in regulating biogeochemical cycles, whereas environmental heterogeneity drives microbial community assembly patterns and is influenced by stochastic and deterministic ecological processes. Currently, the limited understanding of soil microbial community assembly patterns and interactions under temperate forest stand differences pose a challenge in studying the soil microbial involvement during the succession from coniferous to broad-leaved forests. This study investigated the changes in soil bacterial and fungal community diversity and community structure at the regional scale and identified the pathways influencing soil microbial assembly patterns and their interactions. The results showed that broad-leaved forest cover in temperate forests significantly increased soil pH, and effectively increased soil water content, total carbon (TC), total nitrogen (TN), and total phosphorus (TP) contents. Both soil bacterial and fungal alpha diversity indices were correlated with soil physicochemical properties, especially in broad-leaved forest. The bacterial and fungal community composition of coniferous forest was dominated by deterministic process (bacteria: 69.4%; fungi: 88.9%), while the bacterial community composition of broad-leaved forest was dominated by stochastic process (77.8%) and the fungal community composition was dominated by deterministic process (52.8%). Proteobacteria, Acidobacteriota, Actinobacteriota, and Verrucomicrobiota were the dominant phyla of soil bacterial communities in temperate forests. Whereas Ascomycota, Mortierellomycota, Basidiomycota, and Rozellomycota were the dominant phyla of soil fungal communities in temperate forests. Most members of dominant phylum were regulated by soil physical and chemical properties. In addition, the succession from temperate coniferous forest to broad-leaved forest was conducive to maintaining the complex network of soil bacteria and fungi, and the top 20 degree of the major taxa in the network reflected the positive response of microbial interactions to the changes of soil nutrients during forest succession. This study not only shows the mechanism by which species differences in temperate forests of northern China affect soil microbial community assembly processes, but also further emphasizes the importance of the soil microbiome as a key ecosystem factor through co-occurrence network analysis.

27 January 2023 in Environmental Science and Pollution Research
Verified
Journal Article
Closed access
PDF file
MLMin Li
Min Li
YWYayao Wang
Yayao Wang
JXJianxing Xiao
Jianxing Xiao
XYXingFu Yan
XingFu Yan
BLBingru Liu
Bingru Liu

16 May 2024 in Horticulturae
Verified
Journal Article
Open access
PDF file
XZXin Zhang
Xin Zhang
ZBZhanlin Bei
Zhanlin Bei
JLJinglong Li
Jinglong Li
HMHaijun Ma
Haijun Ma
CWCuiping Wang
Cuiping Wang
XYXingFu Yan
XingFu Yan
Pollen fertility is a critical factor in seed development and crop breeding. Extensive studies have explored the mechanisms of pollen fertility in model plants and economic crops. However, the mechanisms of pollen abortion in medicinal and edible plants, including Lycium barbarum, remain elusive. This study utilized transcriptome analysis to identify key genes and regulatory networks implicated in pollen fertility in L. barbarum. The results demonstrated differential expression of 12,185 genes (DEGs) between the sterile and fertile lines, encompassing 489 genes that exhibited variation across the five stages of pollen development. Additionally, GO and KEGG enrichment analyses indicated that the DEGs were predominantly associated with energy metabolism, carbohydrate metabolism, and notably, hydrolase activity. Co-expression network analysis unveiled two modules intimately associated with fertility, each comprising 908 and 756 hub genes, incorporating β-1,3-glucanase genes (Glu) and co-expressed transcription factors (TFs). Phylogenetic analysis implied that LbGlu1 was a potential candidate gene implicated in regulating pollen abortion in L. barbarum. This work advances a novel understanding of pollen abortion in L. barbarum and offers theoretical support for the utilization of sterility genes to enhance crop improvement.

23 October 2021 in Mitochondrial DNA Part B
Verified
Journal Article
Open access
XDXiaodong Ding
Xiaodong Ding
CZChaopan Zhang
Chaopan Zhang
YGYangqiong Gao
Yangqiong Gao
ZBZhanlin Bei
Zhanlin Bei
XYXingFu Yan
XingFu Yan
Astragalus galactites is a medicinal plant. The total plastome length of A. galactites is 126,117 bp. It contains a large single-copy region of 69,805 bp, two inverted repeat regions of 20,638 bp, and a small single-copy region of 15,036 bp. The cp genome contains 110 complete genes, including 75 protein-coding genes (75 PCGs), 4 ribosomal RNA genes (4 rRNAs), and 30 tRNA genes (30 tRNAs). The overall GC content of cp DNA is 33.9%, the corresponding values of the LSC, SSC, and IR regions are 33.0%, 30.4%, and 43.3% respectively. The phylogenetic tree shows that A. galactites has the closest relationship with A. laxmannii.

16 September 2021 in Environmental Science and Pollution Research
Verified
Journal Article
Closed access
PDF file
MLMin Li
Min Li
YWYayao Wang
Yayao Wang
LMLu Ma
Lu Ma
XYXingFu Yan
XingFu Yan
QLQian Lei
Qian Lei

10 September 2022 in Journal of Plant Ecology
Verified
Journal Article
Open access
PDF file
JZJinfeng Zhang
Jinfeng Zhang
JGJingru Ge
Jingru Ge
XYXingFu Yan
XingFu Yan
BDBuddhi Dayananda
Buddhi Dayananda
YLYonghong Luo
Yonghong Luo
JLJunqing Li
Junqing Li
Rodents attack oak (Quercus wutaishanica) seeds based on their sizes and frequencies before germination. However, the predation of oak seeds post-germination (seedling cotyledons) is not well studied. Here, we not only tested the preference of rodents for Q. wutaishanica seedling cotyledons based on the frequency of large-seeded vs. small-seeded (FLS), but also evaluated the effects of predation on seedlings growth and survival in different habitats. We transplanted seedlings with the FLS set as 9:1, 7:3, 5:5, 3:7, and 1:9 respectively in the forest gap and under the canopy in the Liupan Mountains National Nature Reserve in Ningxia Hui Autonomous Region, Northwest China. The results showed that: (1) in 1-7 days after transplanting seedlings, rodents prefer the cotyledon of large seeded-seedings while small-seeded seedlings were preferred in 8-60 days, and the positive frequency-dependent predation (FDP) were observed. (2) The cotyledons were preyed on, the apical buds were bitted off, and the whole seedlings were uprooted, which mostly occurred under the forest canopy. At the end of a growing season, the survival rate of seedlings in the forest gaps were more than twice that under forest canopies. (3) If cotyledons were preyed on, the growth of Q. wutaishanica seedlings would not be affected, but the seedlings growth was severely inhibited when the apical bud was bitten off. These results not only provide new insights into the coexistence between rodents and seedlings of different phenotypes also reveal the ecological characteristics of deciduous Quercus regeneration.