Identification, protection and enhancement of essential habitats are priority issues for management and restoration of exploited species. The shores utilized by Asian horseshoe crabs as nurseries were surveyed and the coastal habitat characteristics were described in the northern Beibu Gulf of China. Regression models were applied to explore species‐habitat relationships. Fourteen and ten nursery sites were identified for Tachypleus tridentatus and Carcinoscorpius rotundicauda populations, respectively. Xiacun and Jinhaiwan in the eastern region of the northern Beibu Gulf were the essential nurseries for T. tridentatus, whereas Shanxin and Jiaodong in the western part were the primary nursery shores for C. rotundicauda. These shores supported high densities (4–6 individuals/100 m²) of juvenile horseshoe crab populations. Mangrove and seagrass coverage area, coupled with sediment physico‐chemical parameters, particularly grain size, and the environmental heterogeneity of nursery habitats explained the distribution pattern of juvenile populations. Most juvenile populations were found along the outer fringe of mangroves in the small shallow estuary, particularly near outflows of tidal creeks with generally higher chlorophyll a and organic carbon contents. The distribution of high‐density juvenile populations of both species also overlapped with areas of seagrass patches. These findings highlight the importance of mangroves and seagrasses in the nursery habitat use of Asian horseshoe crabs. Preserving the estuarine habitats with these vegetation types and identifying the high‐use nursery sites should be prioritised in China and other Asian places to conserve the declining Asian horseshoe crab populations.

Marine and intertidal heavy metal pollution has been a major concern in recent years. Tachypleus tridentatus has existed on earth for more than 430 million years. It has suffered a sharp decline in population numbers caused by environmental pollution and anthropogenic disturbance for almost 40 years. However, the effects of heavy metal pollution on juvenile T. tridentatus have not been reported. Here we show the mechanism of cadmium (Cd) detoxification in juvenile T. tridentatus using integrated antioxidant indexes and transcriptomic and metabolomic analysis. High Cd²⁺ concentration caused oxidative stress in juvenile T. tridentatus. The hazards increase with increasing Cd²⁺ concentration in juvenile T. tridentatus. Transcriptomics and metabolomics analyses concluded that high Cd²⁺ concentration resulted in the imbalance of glycerophospholipid metabolism in juvenile T. tridentatus to detoxify Cd. Our results offer a rationale for protective measures and further studies of heavy metal stress in T. tridentatus.