Begoña Caballero-Ruiz

Dr. Begoña Caballero-Ruiz

University of Leeds, Leeds, UK
orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
3 February 2022 in Cells
Verified
Journal Article
Open access
PDF file
CWChristopher W. Wasson
Christopher W. Wasson
BCBegoña Caballero-Ruiz
Begoña Caballero-Ruiz
JGJustin Gillespie
Justin Gillespie
EDEmma Derrett-Smith
Emma Derrett-Smith
Jamel MankouriJamel Mankouri
Jamel Mankouri
FGFrancesco Del Galdo
Francesco Del Galdo
Chloride intracellular channel 4 (CLIC4) is a recently discovered driver of fibroblast activation in Scleroderma (SSc) and cancer-associated fibroblasts (CAF). CLIC4 expression and activity are regulated by TGF-β signalling through the SMAD3 transcription factor. In view of the aberrant activation of canonical Wnt-3a and Hedgehog (Hh) signalling in fibrosis, we investigated their role in CLIC4 upregulation. Here, we show that TGF-β/SMAD3 co-operates with Wnt3a/β-catenin and Smoothened/GLI signalling to drive CLIC4 expression in normal dermal fibroblasts, and that the inhibition of β-catenin and GLI expression or activity abolishes TGF-β/SMAD3-dependent CLIC4 induction. We further show that the expression of the pro-fibrotic marker α-smooth muscle actin strongly correlates with CLIC4 expression in dermal fibroblasts. Further investigations revealed that the inhibition of CLIC4 reverses morphogen-dependent fibroblast activation. Our data highlights that CLIC4 is a common downstream target of TGF-β, Hh, and Wnt-3a through signalling crosstalk and we propose a potential therapeutic avenue using CLIC4 inhibitors

1 April 2024 in Journal of Investigative Dermatology
Verified
Journal Article
Open access
CWChristopher W. Wasson
Christopher W. Wasson
ELEnrico De Lorenzis
Enrico De Lorenzis
ECEva M. Clavane
Eva M. Clavane
RRrebecca ross
rebecca ross
KWKieran A. Walker
Kieran A. Walker
PMPaul James Meakin
Paul James Meakin
BACE1 is well-known for its role in the development of Alzheimer's disease. Recent publications, including our own, have demonstrated a role for this enzyme in other chronic diseases. The aim of this study was to investigate the role of BACE1 in the autoimmune disease systemic sclerosis (SSc). BACE1 protein levels were elevated in the skin of patients with SSc. Inhibition of BACE1 with small-molecule inhibitors or small interfering RNA blocked SSc and fibrotic stimuli-mediated fibroblast activation. Furthermore, we show that BACE1 regulation of dermal fibroblast activation is dependent on β-catenin and Notch signaling. The neurotropic factor brain-derived neurotrophic factor negatively regulates BACE1 expression and activity in dermal fibroblasts. Finally, sera from patients with SSc show higher β-amyloid and lower brain-derived neurotrophic factor levels than healthy controls. The ability of BACE1 to regulate SSc fibroblast activation reveals a therapeutic target in SSc. Several BACE1 inhibitors have been shown to be safe in clinical trials for Alzheimer's disease and could be repurposed to ameliorate fibrosis progression.

6 January 2023 in Cancers
Verified
Journal Article
Open access
PDF file
BCBegoña Caballero-Ruiz
Begoña Caballero-Ruiz
DGDanai Stella Gkotsi
Danai Stella Gkotsi
HOHattie Ollerton
Hattie Ollerton
CMCintli C. Morales-Alcala
Cintli C. Morales-Alcala
RBRosa Bordone
Rosa Bordone
Natalia  Riobo-Del GaldoNatalia Riobo-Del Galdo
Natalia Riobo-Del Galdo
The Hedgehog receptor, Patched1 (PTCH1), is a well-known tumour suppressor. While the tumour suppressor’s activity is mostly ascribed to its function as a repressor of the canonical Smoothened/Gli pathway, its C-terminal domain (CTD) was reported to have additional non-canonical functions. One of them is the reduction of autophagic flux through direct interaction with the Unc-51, like the autophagy activating kinase (ULK) complex subunit autophagy-related protein-101 (ATG101). With the aim of investigating whether this function of PTCH1 is important in cancer cell fitness, we first identified frameshift mutations in the CTD of PTCH1 in cancer databases. We demonstrated that those mutations disrupt PTCH1 interaction with ATG101 and increase autophagic flux. Using deletion mutants of the PTCH1 CTD in co-immunoprecipitation studies, we established that the 1309–1447 region is necessary and sufficient for interaction with ATG101. We next showed that the three most common PTCH1 CTD mutations in endometrial, stomach and colon adenocarcinomas that cause frameshifts at S1203, R1308 and Y1316 lack the ability to interact with ATG101 and limit autophagic flux, determined by bafilomycin A1-sensitive accumulation of the autophagy markers LC3BII and p62. We next engineered PTCH1 indel mutations at S1223 by CRISPR/Cas9 in SW620 colon cancer cells. Comparison of two independent clones harbouring PTCH1 S1223fs mutations to their isogenic parental cell lines expressing wild-type PTCH1 showed a significant increase in basal and rapamycin-stimulated autophagic flux, as predicted by loss of ATG101 interaction. Furthermore, the PTCH1 CTD mutant cells displayed increased proliferation in the presence of rapamycin and reduced sensitivity to glycolysis inhibitors. Our findings suggest that loss of the PTCH1-ATG101 interaction by mutations in the CTD of PTCH1 in cancer might confer a selective advantage by stimulating autophagy and facilitating adaptation to nutrient deprivation conditions.

10 April 2026 in Arthritis & Rheumatology
Verified
Journal Article
Open access
BCBegoña Caballero-Ruiz
Begoña Caballero-Ruiz
CWChristopher W. Wasson
Christopher W. Wasson
RRrebecca ross
rebecca ross
FGFrancesco Del Galdo
Francesco Del Galdo
Objective: Dermal systemic sclerosis (SSc) fibroblasts and their exosomes can activate keratinocytes in SSc, with long noncoding RNA (lncRNA) H19 highlighted as the most up‐regulated RNA in their cargo compared with healthy controls (HCs). The role of H19 in SSc pathogenesis has never been investigated. Here we determine H19 's role in the profibrotic activation of dermal fibroblasts and in their crosstalk with keratinocytes. Methods: Skin biopsies were obtained from the forearms of patients with diffuse SSc (n = 20) or HCs (n = 8), and dermal fibroblasts were explanted. In situ hybridization was used to determine H19 expression in the skin, paired with immunohistochemistry of STAT3 and Collagen1. H19 and STAT3 expression were modulated by retroviral transduction and small interfering RNA. Gel contraction and Transwell coculture were employed for functional studies. Results: In SSc, high H19 expression in skin and explanted dermal fibroblasts compared with HCs showed moderate correlation to well‐described profibrotic markers. Knockdown of H19 in SSc fibroblasts decreased profibrotic gene expression and cell contraction ability. H19 overexpression was sufficient to induce a profibrotic phenotype in HC fibroblasts. Mechanistically, transforming growth factor‐β, interleukin‐6, and interleukin‐11 significantly increased H19 expression in HC fibroblasts (2.2‐, 1.4‐, and 3.5‐fold, respectively) through activation of STAT3. Additionally, the STAT3 and STAT1 activation of keratinocytes induced by coculture with SSc fibroblasts was suppressed by H19 knockdown. Conclusion: This study shows that lncRNA H19 is a key mediator of STAT3‐induced changes in fibrotic activation of fibroblast and keratinocytes in SSc skin and could be considered a promising therapeutic target in tissue fibrosis.

16 March 2026 in bioRxiv
Verified
Preprint
Open access
PDF file
RWRebecca Wells
Rebecca Wells
BCBegoña Caballero-Ruiz
Begoña Caballero-Ruiz
PMPanji Mulipa
Panji Mulipa
ATAlex J. Timmis
Alex J. Timmis
MTMaria Teves
Maria Teves
Natalia  Riobo-Del GaldoNatalia Riobo-Del Galdo
Natalia Riobo-Del Galdo
Background: Systemic sclerosis (SSc) is a severe autoimmune disease characterised by progressive fibrosis driven by fibroblast activation. Primary cilia, key hubs for profibrotic signalling, are markedly shortened in SSc fibroblasts, but the mechanisms underlying this phenotype remain unclear. This study aimed to define the signalling pathways responsible for primary cilia shortening and fibroblast activation in SSc. Methods: Primary dermal fibroblasts from SSc patients and healthy controls were analysed for cilia incidence and length by immunofluorescence, profibrotic marker expression by qPCR, and contractility using gel contraction assays. Cells were treated with TGFβ1 and pharmacological inhibitors targeting AURKA, HDAC6, ROCK2, and Smad3 signalling. CAV1-silenced fibroblasts were used as an in vitro model of SSc. Results: Maintenance of the constitutively short primary cilia phenotype in SSc fibroblasts did not require active TGFβ signalling. However, TGFβ1 induced reversible cilia shortening in healthy fibroblasts and further shortened cilia in SSc fibroblasts to a similar final length, mediated by Rho/ROCK2 rather than canonical Smad3-dependent signalling. Constitutive cilia shortening in SSc was driven by aberrant AURKA activity upstream of HDAC6, promoting ciliary disassembly. Pharmacological inhibition of AURKA or HDAC6 selectively elongated cilia in SSc fibroblasts, reduced profibrotic marker expression, and abrogated fibroblast contractility. CAV1-silenced fibroblasts similarly exhibited constitutive cilia shortening that was reversed by AURKA inhibition without affecting healthy cells. Conclusions: Aberrant activation of the AURKA/HDAC6 axis maintains short primary cilia and promotes fibroblast activation in SSc. These findings reveal a mechanistic link between cilia morphology and fibrosis and identify AURKA as a potential therapeutic target for SSc-associated tissue remodelling.