A wide range of applications in marine ecology extensively uses underwater cameras. Still, to efficiently process the vast amount of data generated, we need to develop tools that can automatically detect and recognize species captured on film. Classifying fish species from videos and images in natural environments can be challenging because of noise and variation in illumination and the surrounding habitat. In this paper, we propose a two-step deep learning approach for the detection and classification of temperate fishes without pre-filtering. The first step is to detect each single fish in an image, independent of species and sex. For this purpose, we employ the You Only Look Once (YOLO) object detection technique. In the second step, we adopt a Convolutional Neural Network (CNN) with the Squeeze-and-Excitation (SE) architecture for classifying each fish in the image without pre-filtering. We apply transfer learning to overcome the limited training samples of temperate fishes and to improve the accuracy of the classification. This is done by training the object detection model with ImageNet and the fish classifier via a public dataset (Fish4Knowledge), whereupon both the object detection and classifier are updated with temperate fishes of interest. The weights obtained from pre-training are applied to post-training as a priori. Our solution achieves the state-of-the-art accuracy of 99.27% using the pre-training model. The accuracies using the post-training model are also high; 83.68% and 87.74% with and without image augmentation, respectively. This strongly indicates that the solution is viable with a more extensive dataset.

The deep learning (DL) revolution is touching all scientific disciplines and corners of our lives as a means of harnessing the power of big data. Marine ecology is no exception. New methods provide analysis of data from sensors, cameras, and acoustic recorders, even in real time, in ways that are reproducible and rapid. Off-the-shelf algorithms find, count, and classify species from digital images or video and detect cryptic patterns in noisy data. These endeavours require collaboration across ecological and data science disciplines, which can be challenging to initiate. To promote the use of DL towards ecosystem-based management of the sea, this paper aims to bridge the gap between marine ecologists and computer scientists. We provide insight into popular DL approaches for ecological data analysis, focusing on supervised learning techniques with deep neural networks, and illustrate challenges and opportunities through established and emerging applications of DL to marine ecology. We present case studies on plankton, fish, marine mammals, pollution, and nutrient cycling that involve object detection, classification, tracking, and segmentation of visualized data. We conclude with a broad outlook of the field’s opportunities and challenges, including potential technological advances and issues with managing complex data sets.

Image-based 3D reconstruction is a challenging task that involves inferring the 3D shape of an object or scene from a set of input images. Learning-based methods have gained attention for their ability to directly estimate 3D shapes. This review paper focuses on state-of-the-art techniques for 3D reconstruction, including the generation of novel, unseen views. An overview of recent developments in the Gaussian Splatting method is provided, covering input types, model structures, output representations, and training strategies. Unresolved challenges and future directions are also discussed. Given the rapid progress in this domain and the numerous opportunities for enhancing 3D reconstruction methods, a comprehensive examination of algorithms appears essential. Consequently, this study offers a thorough overview of the latest advancements in Gaussian Splatting.

The population living in the coastal region relies heavily on fish as a food source due to their vast availability and low cost. This need has given rise to fish farming. Fish farmers and the fishing industry face serious challenges such as lice in the aquaculture ecosystem, wounds due to injuries, early fish maturity, etc. causing millions of fish deaths in the fish aquaculture ecosystem. Several measures, such as cleaner fish and anti-parasite drugs, are utilized to reduce sea lice, but getting rid of them entirely is challenging. This study proposed an image-based machine-learning technique to detect wounds and the presence of lice in the live salmon fish farm ecosystem. A new equally distributed dataset contains fish affected by lice and wounds and healthy fish collected from the fish tanks installed at the Institute of Marine Research, Bergen, Norway. A convolutional neural network is proposed for fish lice and wound detection consisting of 15 convolutional and 5 dense layers. The proposed methodology has a test accuracy of 96.7% compared with established VGG-19 and VGG-16 models, with accuracies of 91.2% and 92.8%, respectively. The model has a low false and true positive rate of 0.011 and 0.956, and 0.0307 and 0.965 for fish having lice and wounds, respectively.

In both terrestrial and marine ecology, physical tagging is a frequently used method to study population dynamics and behavior. However, such tagging techniques are increasingly being replaced by individual re-identification using image analysis. This paper introduces a contrastive learning-based model for identifying individuals. The model uses the first parts of the Inception v3 network, supported by a projection head, and we use contrastive learning to find similar or dissimilar image pairs from a collection of uniform photographs. We apply this technique for corkwing wrasse, Symphodus melops, an ecologically and commercially important fish species. Photos are taken during repeated catches of the same individuals from a wild population, where the intervals between individual sightings might range from a few days to several years. Our model achieves a one-shot accuracy of 0.35, a 5-shot accuracy of 0.56, and a 100-shot accuracy of 0.88, on our dataset.