Amir Ali

Amir Ali


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Journal Article
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Selvakumar MurugesanSelvakumar Murugesan
Selvakumar Murugesan
RCRagavendran Chinnasamy
Ragavendran Chinnasamy
AAAmir Ali
Amir Ali
VAVelusamy Arumugam
Velusamy Arumugam
DLDinesh Kumar Lakshmanan
Dinesh Kumar Lakshmanan
MYMuhammad Younas
Muhammad Younas
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections have triggered a recent pandemic of respiratory disease and affected almost every country all over the world. A large amount of natural bioactive compounds are under clinical investigation for various diseases. In particular, marine natural compounds are gaining more attention in the new drug development process. The present study aimed to identify potential marine-derived inhibitors against the target proteins of COVID-19 using a computational approach. Currently, 16 marine clinical-level compounds were selected for computational screening against the 4 SARS-CoV-2 main proteases. Computational screening resulted from the best drug candidates for each target based on the binding affinity scores and amino acid interactions. Among these, five marine-derived compounds, namely, chrysophaentin A (−6.6 kcal/mol), geodisterol sulfates (−6.6 kcal/mol), hymenidin (−6.4 kcal/mol), plinabulin (−6.4 kcal/mol), and tetrodotoxin (−6.3 kcal/mol) expressed minimized binding energy and molecular interactions, such as covalent and hydrophobic interactions, with the SARS CoV-2 main protease. Using molecular dynamic studies, the root-mean-square deviation (RMSD), root-mean-square fluctuation (RMSF), radius of gyration (ROG), and hydrogen bond (H-Bond) values were calculated for the SARS-CoV-2 main protease with a hymenidin docked complex. Additionally, in silico drug-likeness and pharmacokinetic property assessments of the compounds demonstrated favorable druggability. These results suggest that marine natural compounds are capable of fighting SARS-CoV-2. Further in vitro and in vivo studies need to be carried out to confirm their inhibitory potential.

25 October 2024 in International Journal of Biological Macromolecules
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Journal Article
Closed access
IAImrana Amir
Imrana Amir
AZAmina Zuberi
Amina Zuberi
MKMuhammad Kamran
Muhammad Kamran
ANAneela Nijabat
Aneela Nijabat
MIMuhammad Imran
Muhammad Imran
AAAjaz Ahmad
Ajaz Ahmad

28 March 2026 in Journal of Nanoparticle Research
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JRJuan Pedro Ramírez-Pedroza
Juan Pedro Ramírez-Pedroza
MRMaría del Pilar Ramos-Godínez
María del Pilar Ramos-Godínez
AAAmir Ali
Amir Ali
STSergio Armando Tomás-Velázquez
Sergio Armando Tomás-Velázquez
EHEdgar Hernández-Martínez
Edgar Hernández-Martínez
MAMaría
María
Hydroxyapatite nanoparticles are among the most promising materials, widely used to design novel platforms for treating diseases, including cancer, due to their biocompatibility and structure that enables a wide range of surface functionalization, as observed with polymers. In this work, we grew a polymeric structure, poly(amidoamine) (PAMAM-G4.0-like dendrimer), on the surface of nHAp. The resulting materials were characterized by transmission electron microscopy (TEM), Fourier-transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), and X-ray photoelectron spectroscopy (XPS) to determine their size, morphology, crystallinity, and chemical composition. In vitro cytotoxicity was evaluated through MTT assays on two breast cancer cell lines, MDA-MB-231 and SK-BR-3, and in the healthy MCF-12F breast cell line. Results demonstrated that PAMAM-G4.0-like dendrimer growth was successfully achieved on the surface of hydroxyapatite nanoparticles and that the resulting material had no toxic effects on cells, making it a suitable candidate as a biocompatible platform for the delivery of biomolecules, such as drugs or genes.

1 December 2022 in Preprints.org
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Preprint
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SMSelvakumar Murugesan
Selvakumar Murugesan
RCRagavendran Chinnasamy
Ragavendran Chinnasamy
AAAmir Ali
Amir Ali
SKSafir Ullah Khan
Safir Ullah Khan
VAVelusamy Arumugam
Velusamy Arumugam
Fabián Fernández-LuqueñoFabián Fernández-Luqueño
Fabián Fernández-Luqueño
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections have triggered a recent pandemic of respiratory disease and affected almost every country all over the world. A large amount of natural bioactive compounds is under clinical investigation for various diseas-es. Especially, marine natural compounds are gaining more attention in the new drug develop-ment process. The present study has aimed to identify potential marine-derived inhibitors against the target proteins of COVID-19 using a computational approach. Currently, 16 marine clinical-level compounds were selected for computational screening against the four SARS-CoV-2 main proteases. Computational screening resulted from the best drug candidates for each target based on the binding affinity scores and amino acid interactions. Among these, five marine-derived compounds namely Chrysophaentin A (-6.6 kcal/mol), Geodisterol sulfates (-6.6 kcal/mol), Hymenidin (-6.4 kcal/mol), Plinabulin (-6.4 kcal/mol) and Tetrodotoxin (-6.3 kcal/mol) expressed the minimized binding energy and molecular interactions such as covalent and hydrophobic interactions to the SARS CoV-2 Main Protease. Using Molecular dynamic stud-ies, the Root-Mean-Square Deviation (RMSD), Root-Mean-Square Fluctuation (RMSF), Radius of Gyration (ROG), and Hydrogen bonds (H-Bonds) values were calculated for SARS-CoV-2 Main Protease with Hymenidin docked complex. Additionally, in silico Druglikeness and pharmaco-kinetic property assessments of the compounds demonstrated favorable druggability. These re-sults suggested that marine natural compounds are capable of fighting SARS-CoV-2. Further, in vitro and in vivo studies need to be carried out to confirm their inhibitory potential.