Daniel Andrew Gideon

Dr. Daniel Andrew Gideon

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2012 in Cell Biochemistry and Biophysics
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DGDaniel Andrew Gideon
Daniel Andrew Gideon
RKRashmi Kumari
Rashmi Kumari
ALAndrew M. Lynn
Andrew M. Lynn
KMKelath Murali Manoj
Kelath Murali Manoj

1 June 2016 in Biochimie
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Journal Article
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KMKelath Murali Manoj
Kelath Murali Manoj
APAbhinav Parashar
Abhinav Parashar
AVAvanthika Venkatachalam
Avanthika Venkatachalam
SGSahil Goyal
Sahil Goyal
SASatyalipsu
Satyalipsu
DGDaniel Andrew Gideon
Daniel Andrew Gideon

1 December 2014 in Biochemical and Biophysical Research Communications
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Journal Article
Closed access
APAbhinav Parashar
Abhinav Parashar
AVAvanthika Venkatachalam
Avanthika Venkatachalam
DGDaniel Andrew Gideon
Daniel Andrew Gideon
KMKelath Murali Manoj
Kelath Murali Manoj

1 November 2019 in Archives of Biochemistry and Biophysics
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Journal Article
Closed access
KMKelath Murali Manoj
Kelath Murali Manoj
VSVidhu Soman
Vidhu Soman
VJVivian David Jacob
Vivian David Jacob
APAbhinav Parashar
Abhinav Parashar
DGDaniel Andrew Gideon
Daniel Andrew Gideon
NBNikolai Bazhin
Nikolai Bazhin

1 January 2020 in BioMolecular Concepts
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Journal Article
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KMKelath Murali Manoj
Kelath Murali Manoj
SRSurjith Ramasamy
Surjith Ramasamy
APAbhinav Parashar
Abhinav Parashar
DGDaniel Andrew Gideon
Daniel Andrew Gideon
VSVidhu Soman
Vidhu Soman
KPKannan Pakshirajan
Kannan Pakshirajan
The inefficiency of cyanide/HCN (CN) binding with heme proteins (under physiological regimes) is demonstrated with an assessment of thermodynamics, kinetics, and inhibition constants. The acute onset of toxicity and CN’s mg/Kg LD 50 (μM lethal concentration) suggests that the classical hemeFe binding-based inhibition rationale is untenable to account for the toxicity of CN. In vitro mechanistic probing of CN-mediated inhibition of hemeFe reductionist systems was explored as a murburn model for mitochondrial oxidative phosphorylation (mOxPhos). The effect of CN in haloperoxidase catalyzed chlorine moiety transfer to small organics was considered as an analogous probe for phosphate group transfer in mOxPhos. Similarly, inclusion of CN in peroxidase-catalase mediated one-electron oxidation of small organics was used to explore electron transfer outcomes in mOxPhos, leading to water formation. The free energy correlations from a Hammett study and IC 50 /Hill slopes analyses and comparison with ligands ( CO / H 2 S / N 3 - ) $\left( {\text{CO}}/{{{{\text{H}}_{2}}\text{S}}/{\text{N}_{3}^{\text{-}}}\;}\; \right)$ provide insights into the involvement of diffusible radicals and proton-equilibriums, explaining analogous outcomes in mOxPhos chemistry. Further, we demonstrate that superoxide (diffusible reactive oxygen species, DROS) enables in vitro ATP synthesis from ADP+phosphate, and show that this reaction is inhibited by CN. Therefore, practically instantaneous CN ion-radical interactions with DROS in matrix catalytically disrupt mOxPhos, explaining the acute lethal effect of CN.

23 February 2016 in RSC Advances
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Journal Article
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KMKelath Murali Manoj
Kelath Murali Manoj
SGSudeep K. Gade
Sudeep K. Gade
AVAvanthika Venkatachalam
Avanthika Venkatachalam
DGDaniel Andrew Gideon
Daniel Andrew Gideon
Hitherto, electron transfer (ET) between redox proteins has been deemed to occur via donor–acceptor binding, and diffusible reactive species are considered as deleterious side-products in such systems. Herein, ET from cytochrome P450 reductase (CPR, an animal membrane flavoprotein) and horseradish peroxidase (HRP, a plant hemoprotein) to cytochrome c (Cyt c, a soluble animal hemoprotein) was probed under diverse conditions, using standard assays. ET in the CPR-Cyt c system was critically inhibited by cyanide and sub-equivalent levels of polar one-electron cyclers like copper ions, vitamin C/Trolox and superoxide dismutase. In the presence of lipids, inhibition was also afforded by amphipathic molecules vitamin E, palmitoyl-vitamin C and the membrane hemoprotein, cytochrome b5. Such non-specific inhibition (by diverse agents in both aqueous and lipid phases) indicated that electron transfer/relay was effected by small diffusible agents, whose lifetimes are shortened by the diverse radical scavengers. When CPR was retained in a dialysis membrane and Cyt c presented outside in free solution, ET was still observed. Further, HRP (taken at nM levels) catalyzed oxidation of a phenolic substrate was significantly inhibited upon the incorporation of sub-nM levels of Cyt c. The findings imply that CPR-Cyt c or HRP-Cyt c binding is not crucial for ET. Further, fundamental quantitative arguments (based on diffusion/collision) challenge the erstwhile protein–protein binding-assisted ET hypothesis. It is proven beyond reasonable doubt that mobile and diffusible electron carriers (ions and radicals) serve as “redox-relay agents” in the biological ET models/setup studied.