Niklas TYSKLIND

Dr. Niklas TYSKLIND

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 May 2021 in Environmental DNA
Verified
Journal Article
Open access
PDF file
EQErwan Quéméré
Erwan Quéméré
MAMarie Aucourd
Marie Aucourd
VTValérie Troispoux
Valérie Troispoux
SBSébastien Brosse
Sébastien Brosse
JMJérôme Murienne
Jérôme Murienne
MGMaxime Galan
Maxime Galan
Large carnivores play a pivotal regulating role in maintaining healthy and balanced ecosystems; however, most of them are rare and elusive, and knowledge about their resource consumption is scarce. Traditional methods based on morphological identification of undigested remains are labor intensive and often not sufficiently accurate, leading to errors and biased ecological inferences. Here, we developed a multi‐marker DNA metabarcoding approach to analyze the dietary diversity of giant otters (Pteronura brasiliensis) from fecal DNA while controlling predator species identity. We combined two mitochondrial markers, 12S rRNA and cytochrome c oxidase 1 (COI) gene, that target the full range of potential vertebrate and invertebrate prey. We compiled a local reference database of DNA barcodes for most potentially ingested fish, which were used to evaluate the specificity of the metabarcoding primers in silico. Most prey are identified at the species level (>90%) and the dietary profiles provided independently by the two markers are highly similar, whether in terms of list of prey or frequency of occurrences, hence validating the approach. We detected a higher number of rare fish prey with the 12S primers that amplified solely Teleost species while the degenerate COI primers revealed non‐fish prey (e.g., amphibians, snakes, birds, and earthworms) and confirmed predator species identity. This study demonstrated that scat DNA metabarcoding is particularly useful to provide in‐depth information on elusive carnivorous dietary profile. Our methodology opens up new opportunities to understand how top carnivores diet cope with the effects of anthropogenic alteration of ecosystems and identify conflicts with humans and livestock.

12 August 2021 in Molecular Ecology
Verified
Journal Article
Closed access
PDF file
SSSylvain Schmitt
Sylvain Schmitt
NTNiklas TYSKLIND
Niklas TYSKLIND
BHBruno Hérault
Bruno Hérault
MHMyriam Heuertz
Myriam Heuertz

27 February 2024 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
SSSylvain Schmitt
Sylvain Schmitt
PHPatrick Heuret
Patrick Heuret
VTValérie Troispoux
Valérie Troispoux
MBMélanie Beraud
Mélanie Beraud
JCJocelyn Cazal
Jocelyn Cazal
NTNiklas TYSKLIND
Niklas TYSKLIND
Somatic mutations potentially play a role in plant evolution, but common expectations pertaining to plant somatic mutations remain insufficiently tested. Unlike in most animals, the plant germline is assumed to be set aside late in development, leading to the expectation that plants accumulate somatic mutations along growth. Therefore, several predictions were made on the fate of somatic mutations: mutations have generally low frequency in plant tissues; mutations at high frequency have a higher chance of intergenerational transmission; branching topology of the tree dictates mutation distribution; and exposure to UV (ultraviolet) radiation increases mutagenesis. To provide insights into mutation accumulation and transmission in plants, we produced two high-quality reference genomes and a unique dataset of 60 high-coverage whole-genome sequences of two tropical tree species, Dicorynia guianensis (Fabaceae) and Sextonia rubra (Lauraceae). We identified 15,066 de novo somatic mutations in D. guianensis and 3,208 in S. rubra , surprisingly almost all found at low frequency. We demonstrate that 1) low-frequency mutations can be transmitted to the next generation; 2) mutation phylogenies deviate from the branching topology of the tree; and 3) mutation rates and mutation spectra are not demonstrably affected by differences in UV exposure. Altogether, our results suggest far more complex links between plant growth, aging, UV exposure, and mutation rates than commonly thought.

4 February 2022 in Plant Biology
Verified
Journal Article
Closed access
PDF file
SSS Schmitt
S Schmitt
STS Trueba
S Trueba
SCSabrina Coste
Sabrina Coste
ÉDÉ Ducouret
É Ducouret
NTNiklas TYSKLIND
Niklas TYSKLIND
GDGéraldine Derroire
Géraldine Derroire

13 February 2022 in Molecular Ecology
Verified
Journal Article
Closed access
PDF file
SSSylvain Schmitt
Sylvain Schmitt
NTNiklas TYSKLIND
Niklas TYSKLIND
MHMyriam Heuertz
Myriam Heuertz
BHBruno Hérault
Bruno Hérault