Meat quality traits are an important economic trait and remain a major argument, from the producer to the consumer. However, there are a few candidate genes and pathways of chicken meat quality traits that were reported for chicken molecular breeding. The purpose of the present study is to identify the candidate genes and pathways associated with meat quality underlying variations in meat quality. Hence, transcriptome profiles of breast tissue in commercial Digao (DG, 5 male) and Chahua (CH, 5 male) native chicken breeds were analyzed at the age of 100 days. The results found 3525 differentially expressed genes (DEGs) in CH compared to DG with adjusted p-values of ≤0.05 and log2FC ≥ 0.1 FDR ≤ 0.05. Functional analysis of GO showed that the DEGs are mainly involved in the two types of processes of meat quality, such as positive regulation of the metabolic process, extracellular structure organization, collagen trimer, cellular amino acid metabolic process, cellular amino acid catabolic process, and heme binding. Functional analysis of KEGG showed that the DEGs are mainly involved in the two types of processes of meat quality, such as oxidative phosphorylation, carbon metabolism, valine, leucine, and isoleucine degradation, and fatty acid degradation. Many of the DEGs are well known to be related to meat quality, such as COL28A1, COL1A2, MB, HBAD, HBA1, ACACA, ACADL, ACSL1, ATP8A1, CAV1, FADS2, FASN, DCN, CHCHD10, AGXT2, ALDH3A2, and MORN4. Therefore, the current study detected multiple pathways and genes that could be involved in the control of the meat quality traits of chickens. These findings should be used as an essential resource to improve the accuracy of selection for meat traits in chickens using marker-assisted selection based on differentially expressed genes.

Chickens are the first type of bird that was domesticated and spread widely in the world to cover the growing demand for animal protein from meat and eggs, and it was cultivated from a wild ancestor known Red junglefowl (Gallus gallus). Yunnan Province is considered the most diverse in culture and biology among all the provinces of China. There are a total of more than 24 chicken breeds in Yunnan Province. These chickens are characterized by good quality of their meat and eggs, a good immune system against diseases, and the ability to adapt to various environmental and administrative conditions. Yunnan Province is one of the centers of domestication and evolutionary of chickens in the world. There are many studies that have been conducted to evaluate and study the genetic diversity and evolutionary relationship within and among chicken breeds in Yunnan Province and their relationship with wild chicken species and other chicken breeds using phenotypic markers, protein polymorphisms, SNPs marker, microsatellite marker, and mitochondrial DNA marker. However, there is no review that summarizes these studies, and most of these studies were authored in the Chinese language. Therefore, we have reviewed all studies that have been conducted on Yunnan chicken breeds diversity in Yunnan Province.

China has about 107 local chicken breeds and is considered one of the richest countries in terms of genetic resources. This diversity is a source of richness natural resources across the globe and is regarded as an excellent material for genetic improvement of breeds or breeding new breeds around the world. The present review highlights the recent evidence and studies of chicken origin and domestication in China and Southeast Asia. The evidence of molecular genetics and archeological results supported that multiple regions and event were contributed to the creation of chicken evolution from Red Jungle fowl and the findings proposed that one of events happened in domestication of chicken 8000 BP in Southeast of Asia. Several researchers confirmed that China was declared as most important of the world as a first centers for the chicken’s domestication and these chickens have remained in many archaeological sites in China.