In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle scattering (SAS) experiments. Biomolecular SAS has since continued to grow and authors have increasingly adopted the preliminary guidelines. In parallel, integrative/hybrid determination of biomolecular structures is a rapidly growing field that is expanding the scope of structural biology. For SAS to contribute maximally to this field, it is essential to ensure open access to the information required for evaluation of the quality of SAS samples and data, as well as the validity of SAS-based structural models. To this end, the preliminary guidelines for data presentation in a publication are reviewed and updated, and the deposition of data and associated models in a public archive is recommended. These guidelines and recommendations have been prepared in consultation with the members of the International Union of Crystallography (IUCr) Small-Angle Scattering and Journals Commissions, the Worldwide Protein Data Bank (wwPDB) Small-Angle Scattering Validation Task Force and additional experts in the field.

Density fluctuation structures of supercritical carbon dioxide along the isothermal and isochoric lines were observed with small-angle neutron scattering (SANS). All the scattering intensities in the low-$Q$ range were well described with the Ornstein-Zernike (OZ) equation. It was confirmed that there exists a locus where the OZ correlation length and scattering intensity at $Q=0$ exhibit extrema on the isothermal lines: this locus, named the ridge, was interpreted as the boundary by which the supercritical state is divided into liquidlike and gaslike phases. In order to clarify the difference of the fluctuation structure between the liquidlike and the gaslike phases, a real-space molecular distribution was obtained with a reverse Monte Carlo (RMC) method. Number density distributions of $\mathrm{C}{\mathrm{O}}_2$ molecules at all measured states were calculated with the real-space molecular distributions obtained. In addition, the statistical parameters of the number density distributions, the standard deviations, and the skewnesses, were examined. The standard deviations of the number density distributions almost coincide with the results of the OZ analysis. On the other hand, the skewnesses, which describe the asymmetric nature of the number density distribution, clearly showed a difference between the two phases: the skewness became negative in the liquidlike phase, positive in the gaslike phase, and almost zero at the nearest state to the ridge in all isotherms. It was proved with simple equations of statistical mechanics that the skewness is described as the first differential of the magnitude of the density fluctuation with respect to the pressure. We conclude that the skewness, obtained with a RMC analysis for SANS data, is an important structural parameter distinguishing between the liquidlike and gaslike phases.

The Fc portion of immunoglobulin G (IgG) is a horseshoe-shaped homodimer, which interacts with various effector proteins, including Fcγ receptors (FcγRs). These interactions are critically dependent on the pair of N-glycans packed between the two C_H2 domains. Fucosylation of these N-glycans negatively affects human IgG1-FcγRIIIa interaction. The IgG1-Fc crystal structures mostly exhibit asymmetric quaternary conformations with divergent orientations of C_H2 with respect to C_H3. We aimed to provide dynamic views of IgG1-Fc by performing long-timescale molecular dynamics (MD) simulations, which were experimentally validated by small-angle X-ray scattering and nuclear magnetic resonance spectroscopy. Our simulation results indicated that the dynamic conformational ensembles of Fc encompass most of the previously reported crystal structures determined in both free and complex forms, although the major Fc conformers in solution exhibited almost symmetric, stouter quaternary structures, unlike the crystal structures. Furthermore, the MD simulations suggested that the N-glycans restrict the motional freedom of C_H2 and endow quaternary-structure plasticity through multiple intramolecular interaction networks. Moreover, the fucosylation of these N-glycans restricts the conformational freedom of the proximal tyrosine residue of functional importance, thereby precluding its interaction with FcγRIIIa. The dynamic views of Fc will provide opportunities to control the IgG interactions for developing therapeutic antibodies.

α-Crystallin possesses a dynamic quaternary structure mediated by its subunit dynamics. Elucidation of a mechanism of subunit dynamics in homo-oligomers of αB-crystallin was tackled through deuteration-assisted small-angle neutron scattering (DA-SANS) and electrospray ionization (ESI) native mass spectrometry (nMS). The existence of subunit exchange was confirmed with DA-SANS, and monomers liberated from the oligomers were observed with nMS. With increasing temperature, an increase in both the exchange rate and monomer population was observed despite the absence of oligomer collapse. It is proposed that transiently liberated subunits, namely, “traveling subunits,” play a role in subunit exchange. Moreover, we propose that protein function is regulated by these traveling subunits.