Deepak Kumar

Dr. Deepak Kumar

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Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 March 2021 in Communications Biology
Verified
Journal Article
Open access
PDF file
ADAbhisek Dwivedy
Abhisek Dwivedy
AAAnam Ashraf
Anam Ashraf
BJBhavya Jha
Bhavya Jha
DKDeepak Kumar
Deepak Kumar
NANisheeth Agarwal
Nisheeth Agarwal
BBBichitra K. Biswal
Bichitra K. Biswal
Intracellular pathogens including Mycobacterium tuberculosis (Mtb) have evolved with strategies to uptake amino acids from host cells to fulfil their metabolic requirements. However, Mtb also possesses de novo biosynthesis pathways for all the amino acids. This raises a pertinent question- how does Mtb meet its histidine requirements within an in vivo infection setting? Here, we present a mechanism in which the host, by up-regulating its histidine catabolizing enzymes through interferon gamma (IFN-γ) mediated signalling, exerts an immune response directed at starving the bacillus of intracellular free histidine. However, the wild-type Mtb evades this host immune response by biosynthesizing histidine de novo, whereas a histidine auxotroph fails to multiply. Notably, in an IFN-γ−/− mouse model, the auxotroph exhibits a similar extent of virulence as that of the wild-type. The results augment the current understanding of host-Mtb interactions and highlight the essentiality of Mtb histidine biosynthesis for its pathogenesis.

12 December 2022 in Vaccines
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Journal Article
Open access
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BRBhupendra Singh Rawat
Bhupendra Singh Rawat
DKDeepak Kumar
Deepak Kumar
Vijay SoniVijay Soni
Vijay Soni
Eric RosennEric Rosenn
Eric Rosenn
Metabolomics is emerging as a promising tool to understand the effect of immunometabolism for the development of novel host-directed alternative therapies. Immunometabolism can modulate both innate and adaptive immunity in response to pathogens and vaccinations. For instance, infections can affect lipid and amino acid metabolism while vaccines can trigger bile acid and carbohydrate pathways. Metabolomics as a vaccinomics tool, can provide a broader picture of vaccine-induced biochemical changes and pave a path to potentiate the vaccine efficacy. Its integration with other systems biology tools or treatment modes can enhance the cure, response rate, and control over the emergence of drug-resistant strains. Mycobacterium tuberculosis (Mtb) infection can remodel the host metabolism for its survival, while there are many biochemical pathways that the host adjusts to combat the infection. Similarly, the anti-TB vaccine, Bacillus Calmette-Guerin (BCG), was also found to affect the host metabolic pathways thus modulating immune responses. In this review, we highlight the metabolomic schema of the anti-TB vaccine and its therapeutic applications. Rewiring of immune metabolism upon BCG vaccination induces different signaling pathways which lead to epigenetic modifications underlying trained immunity. Metabolic pathways such as glycolysis, central carbon metabolism, and cholesterol synthesis play an important role in these aspects of immunity. Trained immunity and its applications are increasing day by day and it can be used to develop the next generation of vaccines to treat various other infections and orphan diseases. Our goal is to provide fresh insight into this direction and connect various dots to develop a conceptual framework.

9 September 2020 in Molecular Biology Reports
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Journal Article
Closed access
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CKCharu Kulshrestha
Charu Kulshrestha
HPHardik Pathak
Hardik Pathak
DKDeepak Kumar
Deepak Kumar
SDSaurabh Dave
Saurabh Dave
JSJebi Sudan
Jebi Sudan

20 July 2021 in Proteins: Structure, Function, and Bioinformatics
Verified
Journal Article
Closed access
DKDeepak Kumar
Deepak Kumar
BJBhavya Jha
Bhavya Jha
IBIndu Bhatia
Indu Bhatia
AAAnam Ashraf
Anam Ashraf
ADAbhisek Dwivedy
Abhisek Dwivedy
BBBichitra Kumar Biswal
Bichitra Kumar Biswal

19 May 2021
Verified
Book Chapter
Closed access
PDF file
DNDevki Deepesh Neelam
Devki Deepesh Neelam
JSJebi Sudan
Jebi Sudan
DKDeepak Kumar
Deepak Kumar
<!----> <!----> Microbial floras present in crop's vicinity and the soil are close partners of plants in all its developmental stages. These are capable of colonising the rhizosphere and phyllosphere as well as living inside the plant tissues as endophytes. The biodiversity of microbes has been observed with the association of plants from different genera and species. The overburdened population has put enormous pressure on modern agriculture and it has to be more productive, sustainable and environmentally friendly to support the future scenario. The use of beneficial micro-organisms (microbial inoculants) as alternatives to chemical pesticides and synthetic fertilisers in agriculture is needed for sustainable agriculture. The diverse range of activities as well as the number of microbes sorted out in different culture collections around the world may provide an important resource to rationalise the use of chemical fertilisers in agriculture. <!----> <!---->