Soil microbes play a crucial role in ecosystem function. Here, the effects of soil and water conservation measures on soil microbial community structures, biodiversity, and co-occurrence networks are investigated and compared. We sampled soils at three different depths (0–10 cm, 10–20 cm and 20–40 cm) in a citrus orchard that uses long-term soil and water conservation measures, which includes Bermuda grass strip intercropping (BS), Bermuda grass full coverage (BF), Radish–soybean crop rotation strip intercropping (RS) and clear tillage orchards (CT). Results demonstrated that BS and BF yields a significant increase in bacterial richness and diversity of fungal in soils, while BF contains more beneficial microbial taxa, especially those with degrading and nutrient cycling capabilities. Microbial community structures differed significantly among the applied measures. In addition, co-occurrence networks under BS, BF and RS were more complex and robust than that of CT, and the stability of the network in BF was the highest. Microbial interactive stability and potential interactions in bacterial networks were stronger than those of fungi. The distribution of dominant phyla showed that Chloroflexi and Ascomycota dominated the different soil and water conservation measures. Proteobacteria and Ascomycota are revealed to be keystone species in bacterial networks and fungal networks, respectively, while Proteobacteria was the keystone species in microbial networks. Though the relative abundance of Chloroflexi turned out to have increased among the four measures, the relative abundance for Proteobacteria, Acidobacteria and Actinobacteria all decreased along the soil profile, with Acidobacteria under BS to be an exception. Soils under BS and BF had higher total nitrogen, microbial biomass carbon and organic carbon than CT and RS. Organic carbon(C) and total nitrogen(N) in soil were the major drivers of these bacterial community patterns, while there was no significant correlation between them and fungi. Overall, BF increases soil nutrients and microbial diversity, and also promotes ecological stability and interrelations among microbial taxa that collectively improve soil quality in the citrus orchard studied. Therefore, we recommended BF to be an ideal application for citrus orchards of southeast China.

Microbial community structure and metabolic activities have profound impacts on biogeochemical processes in marine sediments. Functional bacteria such as nitrate- and sulfate-reducing bacteria respond to redox gradients by coupling specific reactions amenable to relevant energy metabolisms. However, similar functional patterns have not been observed for sedimentary archaea (except for anaerobic methanotrophs and methanogens). We coupled taxonomic composition with comprehensive geochemical species to investigate the participation of distinct bacteria and archaea in sedimentary geochemical cycles in a sediment core (300 cm) from Pearl River Estuary (PRE). Geochemical properties (NO₃⁻, dissolved Mn and Fe, SO₄²⁺, NH₄⁺; dissolved inorganic carbon (DIC), δ¹³C_DIC, dissolved organic carbon (DOC), total organic carbon (TOC), δ¹³C_TOC, and fluorescent dissolved organic matter (FDOM)) exhibited strong depth variability of different trends. Bacterial 16S rRNA- and dsrB gene abundance decreased sharply with depth while archaeal and bathyarchaeotal 16S rRNA gene copies were relatively constant. This resulted in an increase in relative abundance of archaea from surface (11.6%) to bottom (42.8%). Network analysis showed that bacterial groups of Desulfobacterales, Syntrophobacterales and Gammaproteobacteria were significantly (P < 0.0001) associated with SO₄²⁻ and dissolved Mn while archaeal groups of Bathyarchaeota, Group C3 and Marine Benthic Group D (MBGD) showed close positive correlations (P < 0.0001) with NH₄⁺, δ¹³C_TOC values and humic-like FDOM. Our study suggested that these bacterial groups dominated in redox processes relevant to sulfate or metal oxides, while the archaeal groups are more like to degrade recalcitrant organic compounds in anaerobic sediments.