Assylbek Zhylkibayev

Dr. Assylbek Zhylkibayev

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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2013 in Journal of Biological Chemistry
Verified
Journal Article
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CCChien-Hung Chen
Chien-Hung Chen
Vladimir KiyanVladimir Kiyan
Vladimir Kiyan
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
DKDubek Kazyken
Dubek Kazyken
OBOlga Bulgakova
Olga Bulgakova
DSDos D. Sarbassov
Dos D. Sarbassov
Nutrients are essential for living organisms because they fuel biological processes in cells. Cells monitor nutrient abundance and coordinate a ratio of anabolic and catabolic reactions. Mechanistic target of rapamycin (mTOR) signaling is the essential nutrient-sensing pathway that controls anabolic processes in cells. The central component of this pathway is mTOR, a highly conserved and essential protein kinase that exists in two distinct functional complexes. The nutrient-sensitive mTOR complex 1 (mTORC1) controls cell growth and cell size by phosphorylation of the regulators of protein synthesis S6K1 and 4EBP1, whereas its second complex, mTORC2, regulates cell proliferation by functioning as the regulatory kinase of Akt and other members of the AGC kinase family. The regulation of mTORC2 remains poorly characterized. Our study shows that the cellular ATP balance controls a basal kinase activity of mTORC2 that maintains the integrity of mTORC2 and phosphorylation of Akt on the turn motif Thr-450 site. We found that mTOR stabilizes SIN1 by phosphorylation of its hydrophobic and conserved Ser-260 site to maintain the integrity of mTORC2. The optimal kinase activity of mTORC2 requires a concentration of ATP above 1.2 mm and makes this kinase complex highly sensitive to ATP depletion. We found that not amino acid but glucose deprivation of cells or acute ATP depletion prevented the mTOR-dependent phosphorylation of SIN1 on Ser-260 and Akt on Thr-450. In a low glucose medium, the cells carrying a substitution of SIN1 with its phosphomimetic mutant show an increased rate of cell proliferation related to a higher abundance of mTORC2 and phosphorylation of Akt. Thus, the homeostatic ATP sensor mTOR controls the integrity of mTORC2 and phosphorylation of Akt on the turn motif site.

6 November 2022 in Ticks and Tick-borne Diseases
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Journal Article
Open access
MKMarat Kuibagarov
Marat Kuibagarov
RMRiza Makhamed
Riza Makhamed
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
MBMaxat Berdikulov
Maxat Berdikulov
SASarsenbay K Abdrakhmanov
Sarsenbay K Abdrakhmanov
ASAlexandr Shevtsov
Alexandr Shevtsov
Central Asia, including Kazakhstan, is an endemic area of Theileria and Babesia infections in cattle. Current data on the geographic distribution, prevalence, and genetic diversity of these pathogens in vertebrate hosts are lacking in Kazakhstan. The present study aimed to fill this gap, using molecular techniques for the first time. A cross-sectional survey was performed on adult cattle from 40 villages in nine administrative districts of the provinces of Turkistan and Zhambyl, southern Kazakhstan, in summer 2020. A total of 766 blood samples were screened for Theileria annulata (enolase gene), Theileria orientalis (major piroplasm surface protein gene, MPSP) and Babesia spp. (18 S ribosomal RNA gene) using polymerase chain reaction. The genetic variability of Theileria spp. was assessed by sequencing one amplicon from each village. All Babesia spp. positive amplicons were sequenced to identify the species involved. The overall prevalence of infections with T. annulata, T. orientalis and Babesia spp. was 83.0% (40 villages positive), 33.3% (31 villages) and 13.5% (36 villages), respectively. Co-infections with two or three species were present in 48.9% of all positive cattle. Theileria annulata showing a high polymorphism of the enolase gene occurred with similar frequency in both provinces. Theileria orientalis was detected for the first time in Kazakhstan being significantly (P = 0.014) more prevalent in Zhambyl than in Turkistan. Fourteen genotypes of T. orientalis were identified; two belonged to the moderately virulent MPSP-type 1 ('Chitose') and the others to MPSP-type 3 ('Buffeli') which is considered avirulent. The prevalence of Babesia infection was significantly (P < 0.000) higher in Turkistan than in Zhambyl. An unequivocal identification of the species involved was possible in 127 sequenced samples: Babesia occultans was the most common species, followed by Babesia bigemina and Babesia major, the latter being the first record in the country. The results show that Theileria and Babesia infections in cattle are widespread and occur with remarkably high prevalence in the southern Kazakhstan. They also provide first data on the genetic diversity of the species involved.

3 October 2014 in Oncotarget
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DKDubek Kazyken
Dubek Kazyken
YKYelimbek Kaz
Yelimbek Kaz
Vladimir KiyanVladimir Kiyan
Vladimir Kiyan
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
CCChien-Hung Chen
Chien-Hung Chen
DSDos D. Sarbassov
Dos D. Sarbassov
The nuclear import of ribosomal proteins is regulated by mTOR The nuclear import of ribosomal proteins is regulated by mTOR

1 July 2019 in Journal of Biological Chemistry
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DADanysh A. Abetov
Danysh A. Abetov
Vladimir KiyanVladimir Kiyan
Vladimir Kiyan
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
DSDilara A. Sarbassova
Dilara A. Sarbassova
SASanzhar Alybayev
Sanzhar Alybayev
DSDos Djurmakhanbet Sarbassov
Dos Djurmakhanbet Sarbassov
In eukaryotes, ribosome assembly is a rate-limiting step in ribosomal biogenesis that takes place in a distinctive subnuclear organelle, the nucleolus. How ribosomes get assembled at the nucleolar site by forming initial preribosomal complexes remains poorly characterized. In this study, using several human and murine cell lines, we developed a method for isolation of native mammalian preribosomal complexes by lysing cell nuclei through mild sonication. A sucrose gradient fractionation of the nuclear lysate resolved several ribonucleoprotein (RNP) complexes containing rRNAs and ribosomal proteins. Characterization of the RNP complexes with MS-based protein identification and Northern blotting–based rRNA detection approaches identified two types of preribosomes we named here as intermediate preribosomes (IPRibs) and composed preribosome (CPRib). IPRib complexes comprised large preribosomes (105S to 125S in size) containing the rRNA modification factors and premature rRNAs. We further observed that a distinctive CPRib complex consists of an 85S preribosome assembled with mature rRNAs and a ribosomal biogenesis factor, Ly1 antibody–reactive (LYAR), that does not associate with premature rRNAs and rRNA modification factors. rRNA-labeling experiments uncovered that IPRib assembly precedes CPRib complex formation. We also found that formation of the preribosomal complexes is nutrient-dependent because the abundances of IPRib and CPRib decreased substantially when cells were either deprived of amino acids or exposed to an mTOR kinase inhibitor. These findings indicate that preribosomes form via dynamic and nutrient-dependent processing events and progress from an intermediate to a composed state during ribosome maturation.

26 September 2023 in Cells
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Journal Article
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IDIuliia Dorofeeva
Iuliia Dorofeeva
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
ISIrina V. Saltykova
Irina V. Saltykova
VAVenkatram Reddy Atigadda
Venkatram Reddy Atigadda
BABibek Adhikari
Bibek Adhikari
MGMarina S Gorbaytuk
Marina S Gorbaytuk
Previously, the RXR agonist UAB126 demonstrated therapeutic potential to treat obese mice by controlling blood glucose levels (BGL) and altering the expression of genes associated with lipid metabolism and inflammatory response. The purpose of the study was to assess the effects of UAB126 on the progression of diabetic retinopathy (DR) in rodent models of type 1 diabetes (T1D), streptozotocin-induced, and type 2 diabetes (T2D), in db/db mice. UAB126 treatment was delivered either by oral gavage for 6 weeks or by topical application of eye drops for 2 weeks. At the end of the treatment, the retinal function of diabetic mice was assessed by electroretinography (ERG), and their retinal tissue was harvested for protein and gene expression analyses. Bone-marrow cells were isolated and differentiated into bone marrow-derived macrophages (BMDMs). The glycolysis stress test and the 2-DG glucose uptake analysis were performed. Our results demonstrated that in the UAB126-treated diabetic BMDMs, the ECAR rate and the 2-DG uptake were improved as compared to untreated diabetic BMDMs. In UAB126-treated diabetic mice, hyperglycemia was reduced and associated with the preservation of ERG amplitudes and enhanced AMPK activity. Retinas from diabetic mice treated with topical UAB126 demonstrated an increase in Rxr and Ppar and the expression of genes associated with lipid metabolism. Altogether, our data indicate that RXR activation is beneficial to preclinical models of DR.

30 September 2018 in Japanese Journal of Infectious Diseases
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AAArman Abeev
Arman Abeev
AZAssylbek Zhylkibayev
Assylbek Zhylkibayev
DKDinara Kamalova
Dinara Kamalova
NKNadezhda Kusheva
Nadezhda Kusheva
GNGauhar Nusupbaeva
Gauhar Nusupbaeva
ASAlexandr Shevtsov
Alexandr Shevtsov
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