The Jinchuan yak is a new yak population identified in Sichuan, China. This population has a special anatomical characteristic: an additional pair of ribs compared with other yak breeds. The genetic structure of this population is unknown. In the present study, we investigated the maternal phylogeny of this special yak population using the mitochondrial DNA variation. A total of 23 Jinchuan yaks were sequenced for a 823-bp fragment of D-loop control region and three individuals were sequenced for the whole mtDNA genome with a length of 16,371-bp. To compare with the data from other yaks, we extracted sequence data from Genebank, including D-loop of 398 yaks (from 12 breeds) and 55 wild yaks, and whole mitochondrial genomes of 53 yaks (from 12 breeds) and 21 wild yaks. A total of 127 haplotypes were defined, based on the D-loop data. Thirteen haplotypes were defined from 23 mtDNA D-loop sequences of Jinchuan yaks, six of which were shared only by Jinchuan, and one was shared by Jinchuan and wild yaks. The Jinquan yaks were found to carry clades A and B from lineage I and clade C of lineage II, respectively. It was also suggested that the Jinchuan population has no distinct different phylogenetic relationship in maternal inheritance with other breeds of yak. The highly haplotype diversity of the Pali breed, Jinchuan population, Maiwa breed and Jiulong breed suggested that the yak was first domesticated from wild yaks in the middle Himalayan region and the northern Hengduan Mountains. The special anatomic characteristic that we found in the Jinchuan population needs further studies based on nuclear data.
9 October 2021 in Functional & Integrative Genomics
Heavy metals elements are not only related to the functions of ecosystems but also affect human health. To understand the characteristics of heavy metals in the topsoil of the Zoige alpine basin, a total of 252 grass and topsoil samples were collected in May and September 2014. The results showed that only Cd and Pb highly exceeded their background values (BV); in May and September, Cd was 2.02- and 1.55-fold higher than its BV, respectively, and Pb was 2.35- and 2.17-fold above its BV, respectively. The sources of Cd and Pb were homologous. In addition, the comprehensive potential ecological risk index was less than 150, indicating that heavy metal pollution in the study area is currently low. The spatial interpolation indicated that Cd and Pb pollution might be related to tourism and transportation, but the low biological absorption coefficient for all heavy metals showed that heavy metal absorption ability of forage was low and would not impact yak breeding. Finally, the soil was lightly contaminated by Cd and Pb due to the rapid development of the animal husbandry and tourism. The spatial variation of heavy metal in the basin is dominated by structural factors, and the random factors also have an effect on spatial distribution of As, Cd, Cu and Ni. The random factors such as overgrazing can exert an influence on physical structure and the circulation of nutrient substances of meadow soil through livestock grazing and trampling, ultimately affecting the content and distribution of soil heavy metals.