Xabier Contreras

Dr. Xabier Contreras


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 July 2021 in Small Methods
Verified
Journal Article
Open access
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MLMaier Lorizate
Maier Lorizate
OTOihana Terrones
Oihana Terrones
JNJon Ander Nieto‐Garai
Jon Ander Nieto‐Garai
IRIratxe Rojo‐Bartolomé
Iratxe Rojo‐Bartolomé
DCDalila Ciceri
Dalila Ciceri
XCXabier Contreras
Xabier Contreras
Despite more than 20 years of work since the lipid raft concept was proposed, the existence of these nanostructures remains highly controversial due to the lack of noninvasive methods to investigate their native nanorganization in living unperturbed cells. There is an unmet need for probes for direct imaging of nanoscale membrane dynamics with high spatial and temporal resolution in living cells. In this paper, a bioorthogonal‐based cholesterol probe (chol‐N3) is developed that, combined with nanoscopy, becomes a new powerful method for direct visualization and characterization of lipid raft at unprecedented resolution in living cells. The chol‐N3 probe mimics cholesterol in synthetic and cellular membranes without perturbation. When combined with live‐cell super‐resolution microscopy, chol‐N3 demonstrates the existence of cholesterol‐rich nanodomains of <50 nm at the plasma membrane of resting living cells. Using this tool, the lipid membrane structure of such subdiffraction limit domains is identified, and the nanoscale spatiotemporal organization of cholesterol in the plasma membrane of living cells reveals multiple cholesterol diffusion modes at different spatial localizations. Finally, imaging across thick organ samples outlines the potential of this new method to address essential biological questions that were previously beyond reach.

30 December 2024 in Nature Communications
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CPCarla Pérez-Cruz
Carla Pérez-Cruz
AMAlicia Moraleda-Montoya
Alicia Moraleda-Montoya
RLRaquel Liébana
Raquel Liébana
OTOihana Terrones
Oihana Terrones
UAUxue Arrizabalaga
Uxue Arrizabalaga
LALaura Alonso-Saez
Laura Alonso-Saez
Marine brown algae produce the highly recalcitrant polysaccharide fucoidan, contributing to long-term oceanic carbon storage and climate regulation. Fucoidan is degraded by specialized heterotrophic bacteria, which promote ecosystem function and global carbon turnover using largely uncharacterized mechanisms. Here, we isolate and study two Planctomycetota strains from the microbiome associated with the alga Fucus spiralis, which grow efficiently on chemically diverse fucoidans. One of the strains appears to internalize the polymer, while the other strain degrades it extracellularly. Multi-omic approaches show that fucoidan breakdown is mediated by the expression of divergent polysaccharide utilization loci, and endo-fucanases of family GH168 are strongly upregulated during fucoidan digestion. Enzymatic assays and structural biology studies reveal how GH168 endo-fucanases degrade various fucoidan cores from brown algae, assisted by auxiliary hydrolytic enzymes. Overall, our results provide insights into fucoidan processing mechanisms in macroalgal-associated bacteria.

1 February 2022 in Biochimica et Biophysica Acta (BBA) - Biomembranes
Verified
Journal Article
Closed access
JNJon Ander Nieto-Garai
Jon Ander Nieto-Garai
MLMaier Lorizate
Maier Lorizate
XCXabier Contreras
Xabier Contreras

Verified
Journal Article
Open access
PDF file
OTOihana Terrones
Oihana Terrones
JOJune Olazar-Intxausti
June Olazar-Intxausti
IAItxaso Anso
Itxaso Anso
MLMaier Lorizate
Maier Lorizate
JNJon Ander Nieto-Garai
Jon Ander Nieto-Garai
XCXabier Contreras
Xabier Contreras
The Raman phenomenon is based on the spontaneous inelastic scattering of light, which depends on the molecular characteristics of the dispersant. Therefore, Raman spectroscopy and imaging allow us to obtain direct information, in a label-free manner, from the chemical composition of the sample. Since it is well established that the development of many brain diseases is associated with biochemical alterations of the affected tissue, Raman spectroscopy and imaging have emerged as promising tools for the diagnosis of ailments. A combination of Raman spectroscopy and/or imaging with tagged molecules could also help in drug delivery and tracing for treatment of brain diseases. In this review, we first describe the basics of the Raman phenomenon and spectroscopy. Then, we delve into the Raman spectroscopy and imaging modes and the Raman-compatible tags. Finally, we center on the application of Raman in the study, diagnosis, and treatment of brain diseases, by focusing on traumatic brain injury and ischemia, neurodegenerative disorders, and brain cancer.

Verified
Journal Article
Open access
PDF file
JNJon Ander Nieto-Garai
Jon Ander Nieto-Garai
JOJune Olazar-Intxausti
June Olazar-Intxausti
IAItxaso Anso
Itxaso Anso
MLMaier Lorizate
Maier Lorizate
OTOihana Terrones
Oihana Terrones
XCXabier Contreras
Xabier Contreras
Interorganelle membrane contact sites (MCS) are areas of close vicinity between the membranes of two organelles that are maintained by protein tethers. Recently, a significant research effort has been made to study MCS, as they are implicated in a wide range of biological functions, such as organelle biogenesis and division, apoptosis, autophagy, and ion and phospholipid homeostasis. Their composition, characteristics, and dynamics can be studied by different techniques, but in recent years super-resolution fluorescence microscopy (SRFM) has emerged as a powerful tool for studying MCS. In this review, we first explore the main characteristics and biological functions of MCS and summarize the different approaches for studying them. Then, we center on SRFM techniques that have been used to study MCS. For each of the approaches, we summarize their working principle, discuss their advantages and limitations, and explore the main discoveries they have uncovered in the field of MCS.

15 February 2022 in Advanced Science
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Journal Article
Open access
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OMOrnella Morana
Ornella Morana
JNJon Ander Nieto‐Garai
Jon Ander Nieto‐Garai
PBPatrik Björkholm
Patrik Björkholm
JSJorge Bernardino de la Serna
Jorge Bernardino de la Serna
OTOihana Terrones
Oihana Terrones
XCXabier Contreras
Xabier Contreras
The cytokine interferon‐gamma (IFN‐γ) is a master regulator of innate and adaptive immunity involved in a broad array of human diseases that range from atherosclerosis to cancer. IFN‐γ exerts it signaling action by binding to a specific cell surface receptor, the IFN‐γ receptor (IFN‐γR), whose activation critically depends on its partition into lipid nanodomains. However, little is known about the impact of specific lipids on IFN‐γR signal transduction activity. Here, a new conserved cholesterol (chol) binding motif localized within its single transmembrane domain is identified. Through direct binding, chol drives the partition of IFN‐γR2 chains into plasma membrane lipid nanodomains, orchestrating IFN‐γR oligomerization and transmembrane signaling. Bioinformatics studies show that the signature sequence stands for a conserved chol‐binding motif presented in many mammalian membrane proteins. The discovery of chol as the molecular switch governing IFN‐γR transmembrane signaling represents a significant advance for understanding the mechanism of lipid selectivity by membrane proteins, but also for figuring out the role of lipids in modulating cell surface receptor function. Finally, this study suggests that inhibition of the chol‐IFNγR2 interaction may represent a potential therapeutic strategy for various IFN‐γ‐dependent diseases.