Testate amoebae are common single-celled eukaryotic organisms in aquatic ecosystems. Despite their important role in these ecosystems, and their potential as bioindicators and paleoindicators, they remain poorly studied in Mexico. The major objectives of this study were to: 1) increase knowledge of testate amoebae in Mexico’s tropical lakes, and 2) create a catalog of high-quality scanning electron micrographs that can be used for future ecological and paleoenvironmental studies. We collected surface-sediment samples from 29 lakes, located in the Transmexican Volcanic Belt, one at each lake during June and October 2011, and March 2013. Sediments were collected with an Ekman grab and preserved in anhydrous ethanol. Sub-samples were observed under a stereomicroscope and morphometric data for each species were recorded. Total diameter and aperture diameter were measured on circular tests. Irregularly shaped tests were measured for length and width of the aperture and for the size of the whole test. If a specimen possessed spines, the length of one randomly selected spine was measured. The best-preserved specimen of each taxon was photographed with an optical microscope and a scanning electron microscope (SEM). We found 41 taxa of testate amoebae belonging to the genera: Arcella, Centropyxis, Cucurbitella, Cyclopyxis, Cyphoderia, Difflugia, Euglypha, Lesquereusia, Pentagonia, Pseudodifflugia and Scutiglypha. Twelve species not previously reported for Mexico were recorded, along with 13 varieties. The average number of taxa recorded in each lake was eight, and the highest taxonomic richness was 18. The taxon found in the greatest number of lakes was Centropyxis aculeata var. aculeata. Taxonomic richness varied among lakes in the same region. This could reflect lake-specific differences in environmental conditions, underscoring the need for more detailed studies that include collection of data on physical and chemical variables in the lakes. Our results highlighted the need of further studies for the distribution patterns and ecology of lacustrine testate amoebae.

Testate amoebae are unicellular organisms characterized by a shell-like test. Due to their potential use as bioindicators (and paleoindicators), these organisms have been increasingly studied in the last decade, particularly in temperate latitudes. This study’s objective was two-fold: to identify the testate amoeba communities sampled from 29 water bodies in Mexico and to determine if their presence and distribution also made them suitable bioindicators for tropical latitudes. A total of 40 taxa were recorded within 12 genera, and six significant variables—oxygen, pH, depth, temperature, conductivity, and total alkalinity—that explained testate amoeba distribution within and among the water bodies were identified through a canonical correspondence analysis. The Q-mode clusters rendered five assemblages, each named after their respective dominant species: 1) Centropyxis aculeata strain “aculeata” assemblage, 2) Difflugia oblonga strain “bryophila” assemblage, 3) Diverse assemblage, 4) Cucurbitella tricuspis assemblage, and 5) Difflugia protaeiformis strain “acuminata” assemblage. We found that Cucurbitella tricuspis and the Difflugia protaeiformis strain “acuminata” have similar ecological preferences to those reported previously for temperate lakes, with the former identified as an indicator of eutrophic environments and the latter as an indicator of low oxygen levels. On the other hand, Centropyxis aculeata strain “aculeata” and Arcella vulgaris seem to indicate adverse conditions, but the source of this environmental stress apparently differs from that reported in temperate latitudes. Although this stress source could not be identified in all cases, our study nonetheless demonstrates that testate amoebae in the water bodies of central Mexico could reveal the presence of environmental stress.

The ecology of aquatic protists such as testate amoebae is poorly known worldwide, but is almost completely unknown in lakes of the northern Neotropics. To address this knowledge gap, we analyzed testate amoebae (Amoebozoa: Arcellinidae) in lakes of the Lacandón Forest, one of the most biodiverse parts of southern México. We set out to evaluate the diversity of testate amoebae communities and assess whether testate amoebae taxa are reliable indicators of environmental variables dissolved oxygen and water depth. We collected 17 surface sediment samples from a range of water depths in six lakes across the Naha-Metzabok Biosphere Reserve, northeastern Chiapas state. We identified 15 testate amoebae taxa distributed across seven genera. Eleven were identified to species level and four to strain (infra-subspecific level), and taxa were distributed unevenly among samples. Distribution of taxa in samples was related to dissolved oxygen (DO) concentration in the water measured near the sediment surface. Arcella discoides and Centropyxis aculeata strain “aculeata” were the most tolerant of low oxygen concentrations, whereas the other taxa require higher DO levels. The influence of oxygen was also seen at the assemblage level. Sites with low DO concentrations had Shannon Diversity Index (SDI) values <1.5, an indication of stressful ambient conditions. We identified two species assemblage types, which are distinguished by their oxygen concentration requirements. Assemblage 1 was more diverse and possessed species that are intolerant of low oxygen concentrations, whereas Assemblage 2 possessed fewer, rarer, opportunistic species that tolerate stressful conditions. Low oxygen concentrations are related to water depth and the combination of these two variables is important in determining the composition of testate amoebae assemblages in Lacandón Forest lakes. Quantitative relationships between testate amoebae assemblages and water depth will enable use of sedimented amoebae remains for paleolimnological inference of past water level changes in lakes of the Lacandón Forest.

Freshwater quality represents a central issue for human populations and the conservation of aquatic communities. In this sense, freshwater reservoirs, such as lakes, require proper management and monitoring plans to avoid their deterioration and pollution. Bioindicators, such as testate amoebae, are an excellent tool increasingly utilized for limnology and paleolimnology to assess the trophic status of lacustrine environments. However, despite their potential as bioindicators, the ecological research status of testate amoebae in Central American lakes remains poor. We conducted our research at highland Lake Chichoj, Alta Verapaz, Guatemala, which has become increasingly eutrophic since the 1980s. This study contributes to fill the knowledge gap about neotropical testate amoebae, parallel to testing their utility as bioindicators of lacustrine conditions. From a collection of 12 surface sediment samples (associated with different land uses), we found 19 testate amoebae taxa, and for the first time in Guatemala, we recorded Arcella megastoma, Arcella gibbosa, Cucurbitella tricuspis, Difflugia protaeiformis strain “acuminata”, Difflugia urceolata strain “elongata”, Lesquereusia spiralis, Lesquereusia modesta, and Mediolus corona. Our cluster analyses revealed three testate amoebae assemblages in connection to trophic conditions: 1) Stressed Conditions (SC), 2) Lowest Contamination Conditions (LC), and 3) Deep Transitional Conditions Assemblage (DT). After performing a transformation-based redundancy analysis (tb-RDA), we found total organic carbon as the only significant environmental parameter associated with testate amoebae assemblages (p<0.004). Our indicator species analysis (IndVal) confirms the eutrophic regime of Lake Chichoj in connection to the presence of Cucurbitella tricuspis and Centropyxis aculeata strain “aculeata” as indicators of nutrient enrichment and stressful conditions. The testate amoebae assemblages identified in Lake Chichoj represent a critical baseline for future studies of Guatemalan lakes, strengthening our understanding of the causal factors behind water quality in neotropical regions.

Testate amoebae are bioindicators sensitive to environmental change, which show good preservation in sediments of low pH environments, such as high mountain lakes (LAM). The presence and diversity of testate amoebae were documented in surface sediments and sediment cores, dated with 210Pb, from the only 2 LAMs in Mexico (El Sol and La Luna), which have shown signs of recent human-induced changes. A total of 18 taxa were recorded and the main species observed in both lakes were Difflugia glans “glans” and D. globulosa. Specific richness and Shannon’s diversity index were higher in Lake El Sol than in the smaller, acidic and ultraoligotrophic Lake La Luna. The sediment cores recorded changes, during the last 20 to 25 years, in the composition of the testate amoebae communities (El Sol) and in their dominance (La Luna), as well as increased accumulation rate and concentrations of iron and organic carbon. These are signs of anthropogenic impact on the lakes, which should alert us to improve protection measures for these unique ecosystems, not only at the local (crater) level, but also with a more regional perspective.