Maxim A Dubinnyi

Dr. Maxim A Dubinnyi

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Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2010 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
Zakhar O. ShenkarevZakhar O. Shenkarev
Zakhar O. Shenkarev
APAlexander S. Paramonov
Alexander S. Paramonov
ELEkaterina N. Lyukmanova
Ekaterina N. Lyukmanova
LSLyudmila N. Shingarova
Lyudmila N. Shingarova
SYSergei A. Yakimov
Sergei A. Yakimov
AAAlexander S. Arseniev
Alexander S. Arseniev

26 April 2005 in Biochemical Journal
Verified
Journal Article
Closed access
PDPeter V. Dubovskii
Peter V. Dubovskii
DLDmitry M. Lesovoy
Dmitry M. Lesovoy
Maxim A DubinnyiMaxim A Dubinnyi
Maxim A Dubinnyi
AKAnastasiya G. Konshina
Anastasiya G. Konshina
Yuri UtkinYuri Utkin
Yuri Utkin
AAAlexander S. Arseniev
Alexander S. Arseniev
The CTs (cytotoxins) I and II are positively charged three-finger folded proteins from venom of Naja oxiana (the Central Asian cobra). They belong to S- and P-type respectively based on Ser-28 and Pro-30 residues within a putative phospholipid bilayer binding site. Previously, we investigated the interaction of CTII with multilamellar liposomes of dipalmitoylphosphatidylglycerol by wide-line (31)P-NMR spectroscopy. To compare interactions of these proteins with phospholipids, we investigated the interaction of CTI with the multilamellar liposomes of dipalmitoylphosphatidylglycerol analogously. The effect of CTI on the chemical shielding anisotropy and deformation of the liposomes in the magnetic field was determined at different temperatures and lipid/protein ratios. It was found that both the proteins do not affect lipid organization in the gel state. In the liquid crystalline state of the bilayer they disturb lipid packing. To get insight into the interactions of the toxins with membranes, Monte Carlo simulations of CTI and CTII in the presence of the bilayer membrane were performed. It was found that both the toxins penetrate into the bilayer with the tips of all the three loops. However, the free-energy gain on membrane insertion of CTI is smaller (by approximately 7 kcal/mol; 1 kcal identical with 4.184 kJ) when compared with CTII, because of the lower hydrophobicity of the membrane-binding site of CTI. These results clearly demonstrate that the P-type cytotoxins interact with membranes stronger than those of the S-type, although the mode of the membrane insertion is similar for both the types.

1 October 2004 in Biochemistry (Moscow)
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Journal Article
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Alexey FeofanovAlexey Feofanov
Alexey Feofanov
GSGeorge Vladimirovich Sharonov
George Vladimirovich Sharonov
Maxim A DubinnyiMaxim A Dubinnyi
Maxim A Dubinnyi
MAM. V. Astapova
M. V. Astapova
IKI. A. Kudelina
I. A. Kudelina
AAA. S. Arseniev
A. S. Arseniev

15 April 2014 in Angewandte Chemie International Edition
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Journal Article
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VPValentin N. Petushkov
Valentin N. Petushkov
Maxim A DubinnyiMaxim A Dubinnyi
Maxim A Dubinnyi
ATAleksandra S. Tsarkova
Aleksandra S. Tsarkova
NRNatalja S. Rodionova
Natalja S. Rodionova
MBMikhail Baranov
Mikhail Baranov
IYIlia Yampolsky
Ilia Yampolsky

11 April 2003 in European Journal of Biochemistry
Verified
Journal Article
Open access
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PDPeter V. Dubovskii
Peter V. Dubovskii
DLDmitry M. Lesovoy
Dmitry M. Lesovoy
Maxim A DubinnyiMaxim A Dubinnyi
Maxim A Dubinnyi
Yuri UtkinYuri Utkin
Yuri Utkin
AAAlexander Arseniev
Alexander Arseniev
The cardiotoxin (cytotoxin II, or CTII) isolated from cobra snake (Naja oxiana) venom is a 60‐residue basic membrane‐active protein featuring three‐finger beta sheet fold. To assess possible modes of CTII/membrane interaction 31P‐ and 1H‐NMR spectroscopy was used to study binding of the toxin and its effect onto multilamellar vesicles (MLV) composed of either zwitterionic or anionic phospholipid, dipalmitoylglycerophosphocholine (Pam2Gro‐PCho) or dipalmitoylglycerophosphoglycerol (Pam2Gro‐PGro), respectively. The analysis of 1H‐NMR linewidths of the toxin and 31P‐NMR spectral lineshapes of the phospholipid as a function of temperature, lipid‐to‐protein ratios, and pH values showed that at least three distinct modes of CTII interaction with membranes exist: (a) nonpenetrating mode; in the gel state of the negatively charged MLV the toxin is bound to the surface electrostatically; the binding to Pam2Gro‐PCho membranes was not observed; (b) penetrating mode; hydrophobic interactions develop due to penetration of the toxin into Pam2Gro‐PGro membranes in the liquid‐crystalline state; it is presumed that in this mode CTII is located at the membrane/water interface deepening the side‐chains of hydrophobic residues at the tips of the loops 1–3 down to the boundary between the glycerol and acyl regions of the bilayer; (c) the penetrating mode gives way to isotropic phase, stoichiometrically well‐defined CTII/phospholipid complexes at CTII/lipid ratio exceeding a threshold value which was found to depend at physiological pH values upon ionization of the imidazole ring of His31. Biological implications of the observed modes of the toxin–membrane interactions are discussed.

28 August 2019 in Proceedings of the National Academy of Sciences
Verified
Journal Article
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AKAlexey A. Kotlobay
Alexey A. Kotlobay
Maxim A DubinnyiMaxim A Dubinnyi
Maxim A Dubinnyi
KPKonstantin V. Purtov
Konstantin V. Purtov
EGElena B. Guglya
Elena B. Guglya
NRNatalja S. Rodionova
Natalja S. Rodionova
ATAleksandra S. Tsarkova
Aleksandra S. Tsarkova
Marine polychaetes Odontosyllis undecimdonta , commonly known as fireworms, emit bright blue-green bioluminescence. Until the recent identification of the Odontosyllis luciferase enzyme, little progress had been made toward characterizing the key components of this bioluminescence system. Here we present the biomolecular mechanisms of enzymatic (leading to light emission) and nonenzymatic (dark) oxidation pathways of newly described O. undecimdonta luciferin. Spectral studies, including 1D and 2D NMR spectroscopy, mass spectrometry, and X-ray diffraction, of isolated substances allowed us to characterize the luciferin as an unusual tricyclic sulfur-containing heterocycle. Odontosyllis luciferin does not share structural similarity with any other known luciferins. The structures of the Odontosyllis bioluminescent system’s low molecular weight components have enabled us to propose chemical transformation pathways for the enzymatic and nonspecific oxidation of luciferin.