Seagrass ecosystems have been declining, and restorations are conducted in many parts of the world to compensate for habitat loss and restore the ecosystem services seagrasses provide. Assessment of transplantation success requires the monitoring of the level of biodiversity between the donor and transplanted sites. In this study, we assessed a seagrass ecosystem after restoration in terms of the diversity of marine organisms using environmental DNA (eDNA) to compare four sites: (1) bare sand, (2) a natural meadow of Cymodocea serrulata, (3) a natural meadow of Halophila ovalis, and (4) a transplanted seagrass meadow. The results showed the presence of 3 domains, 34 phyla, 59 classes, 92 orders, 155 families, 156 genera, and 121 species. Proteobacteria, Actinobacteria, Cyanobacteria, and Bacteroidetes were the dominant bacterial phyla. Among eukaryotes, Phragmoplastophyta/Charophyta (epiphytes), Ascomycota (fungi), Cnidaria (jelly fish), and Arthropoda (Crabs and bivalves) were the dominant phyla. Dugong tails and commercial species (sea cucumber, dog conch, and swimming crab) have been observed in both the natural and transplanted meadows. Relative abundance among the four sites was significantly different. There were no differences in species richness and evenness between the four sites and no differences in species richness and evenness between the natural meadows and the transplanted seagrass meadow. It is possible that transplanted seagrass meadow can be successfully restored and established and can provide habitat for fauna and microbes. Additionally, fauna are not limited in their capacity to move between the natural and transplanted habitats. This study provides an assessment of biodiversity of restored seagrass patches and a better understanding of a seagrass ecosystem after restoration. However, to assess seagrass ecosystem services after restoration and the success of restoration actions, long-term monitoring of marine organism diversity and additional assessments are needed.

High-value sea cucumber species are overexploited, and the focus of fishing has shifted to low-value species, e.g., Holothuria (Halodeima) atra. In this study, the population of H. atra was investigated in three different habitats: a seagrass habitat, a seaweed habitat, and bare sand, at an intertidal zone of Lidee Island, Mu Ko Phetra National Park, Satun Province, Thailand. The habitat type was the predictor which had a significant impact on the density and frequency distribution of the body length of H. atra individuals. H. atra was only found in the seaweed and seagrass habitats. The highest density of this species, 91.1 ± 9.6 inds 100 m⁻², was found in the seaweed habitat. The frequency distribution of the body length of H. atra individuals in the seagrass habitat showed no significant change throughout the study period, but the mode of the length frequency distribution in the seaweed habitat gradually rose from 9 to 22 cm from January−September 2019. Asexual reproduction was the major source of recruitment. The occurrence of recently fissioned individuals was slightly higher in the seaweed habitat than in the seagrass habitat (6.0 ± 1.1% and 2.2 ± 0.6%, respectively). This study showed that H. atra was most abundant in the seaweed habitat, which is likely because of the greater availability in this habitat of food sources, microhabitats, and protection against sun irradiance, desiccation, and stress during low tides.