Javier Pérez

Dr. Javier Pérez

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Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 August 2017 in Acta Crystallographica Section D Structural Biology
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Journal Article
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JTJill Trewhella
Jill Trewhella
ADAnthony P. Duff
Anthony P. Duff
DDDurand Dominique
Durand Dominique
FGFrank Gabel
Frank Gabel
JGJ. Mitchell Guss
J. Mitchell Guss
AWAndrew E. Whitten
Andrew E. Whitten
In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle scattering (SAS) experiments. Biomolecular SAS has since continued to grow and authors have increasingly adopted the preliminary guidelines. In parallel, integrative/hybrid determination of biomolecular structures is a rapidly growing field that is expanding the scope of structural biology. For SAS to contribute maximally to this field, it is essential to ensure open access to the information required for evaluation of the quality of SAS samples and data, as well as the validity of SAS-based structural models. To this end, the preliminary guidelines for data presentation in a publication are reviewed and updated, and the deposition of data and associated models in a public archive is recommended. These guidelines and recommendations have been prepared in consultation with the members of the International Union of Crystallography (IUCr) Small-Angle Scattering and Journals Commissions, the Worldwide Protein Data Bank (wwPDB) Small-Angle Scattering Validation Task Force and additional experts in the field.

16 November 2021 in Journal of Applied Crystallography
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ATAurelien Thureau
Aurelien Thureau
PRPierre Roblin
Pierre Roblin
JPJavier Pérez
Javier Pérez

1 September 2016 in Journal of Applied Crystallography
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EBEmre Brookes
Emre Brookes
PVPatrice Vachette
Patrice Vachette
MRMattia Rocco
Mattia Rocco
JPJavier Pérez
Javier Pérez
Size-exclusion chromatography coupled with SAXS (small-angle X-ray scattering), often performed using a flow-through capillary, should allow direct collection of monodisperse sample data. However, capillary fouling issues and non-baseline-resolved peaks can hamper its efficacy. The UltraScan solution modeler (US-SOMO) HPLC-SAXS (high-performance liquid chromatography coupled with SAXS) module provides a comprehensive framework to analyze such data, starting with a simple linear baseline correction and symmetrical Gaussian decomposition tools [Brookes, Pérez, Cardinali, Profumo, Vachette & Rocco (2013). J. Appl. Cryst. 46, 1823–1833]. In addition to several new features, substantial improvements to both routines have now been implemented, comprising the evaluation of outcomes by advanced statistical tools. The novel integral baseline-correction procedure is based on the more sound assumption that the effect of capillary fouling on scattering increases monotonically with the intensity scattered by the material within the X-ray beam. Overlapping peaks, often skewed because of sample interaction with the column matrix, can now be accurately decomposed using non-symmetrical modified Gaussian functions. As an example, the case of a polydisperse solution of aldolase is analyzed: from heavily convoluted peaks, individual SAXS profiles of tetramers, octamers and dodecamers are extracted and reliably modeled.

1 October 2012 in Current Opinion in Structural Biology
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JPJavier Pérez
Javier Pérez
YNYoshinori Nishino
Yoshinori Nishino

7 June 2012 in Journal of the American Chemical Society
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Journal Article
Closed access
ABAlice Berthaud
Alice Berthaud
JMJohn Manzi
John Manzi
JPJavier Pérez
Javier Pérez
SMStéphanie Mangenot
Stéphanie Mangenot