Oliver Gurney-Champion

Oliver Gurney-Champion


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 August 2019 in Magnetic Resonance in Medicine
Verified
Journal Article
Closed access
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SBSebastiano Barbieri
Sebastiano Barbieri
OGOliver Gurney-Champion
Oliver Gurney-Champion
RKRemy Klaassen
Remy Klaassen
HTHarriet C. Thoeny
Harriet C. Thoeny

9 June 2021 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
PDF file
MKMisha Kaandorp
Misha Kaandorp
SBSebastiano Barbieri
Sebastiano Barbieri
RKRemy Klaassen
Remy Klaassen
HLHanneke Van Laarhoven
Hanneke Van Laarhoven
HCHans Crezee
Hans Crezee
OGOliver Gurney-Champion
Oliver Gurney-Champion
Purpose: Earlier work showed that IVIM‐NETorig, an unsupervised physics‐informed deep neural network, was faster and more accurate than other state‐of‐the‐art intravoxel‐incoherent motion (IVIM) fitting approaches to diffusion‐weighted imaging (DWI). This study presents a substantially improved version, IVIM‐NEToptim, and characterizes its superior performance in pancreatic cancer patients.Method: In simulations (signal‐to‐noise ratio [SNR] = 20), the accuracy, independence, and consistency of IVIM‐NET were evaluated for combinations of hyperparameters (fit S0, constraints, network architecture, number of hidden layers, dropout, batch normalization, learning rate), by calculating the normalized root‐mean‐square error (NRMSE), Spearman’s ρ, and the coefficient of variation (CVNET), respectively. The best performing network, IVIM‐NEToptim was compared to least squares (LS) and a Bayesian approach at different SNRs. IVIM‐NEToptim’s performance was evaluated in an independent dataset of 23 patients with pancreatic ductal adenocarcinoma. Fourteen of the patients received no treatment between two repeated scan sessions and nine received chemoradiotherapy between the repeated sessions. Intersession within‐subject standard deviations (wSD) and treatment‐induced changes were assessed.Results: In simulations (SNR = 20), IVIM‐NEToptim outperformed IVIM‐NETorig in accuracy (NRMSE(D) = 0.177 vs 0.196; NMRSE(f) = 0.220 vs 0.267; NMRSE(D*) = 0.386 vs 0.393), independence (ρ(D*, f) = 0.22 vs 0.74), and consistency (CVNET(D) = 0.013 vs 0.104; CVNET(f) = 0.020 vs 0.054; CVNET(D*) = 0.036 vs 0.110). IVIM‐NEToptim showed superior performance to the LS and Bayesian approaches at SNRs < 50. In vivo, IVIM‐NEToptim showed significantly less noisy parameter maps with lower wSD for D and f than the alternatives. In the treated cohort, IVIM‐NEToptim detected the most individual patients with significant parameter changes compared to day‐to‐day variations.Conclusion: IVIM‐NEToptim is recommended for accurate, informative, and consistent IVIM fitting to DWI data.

4 April 2018 in PLOS ONE
Verified
Journal Article
Open access
PDF file
OGOliver Gurney-Champion
Oliver Gurney-Champion
RKRemy Klaassen
Remy Klaassen
MFMartijn Froeling
Martijn Froeling
SBSebastiano Barbieri
Sebastiano Barbieri
JSJaap Stoker
Jaap Stoker
ANAart J Nederveen
Aart J Nederveen
The intravoxel incoherent motion (IVIM) model for diffusion-weighted imaging (DWI) MRI data bears much promise as a tool for visualizing tumours and monitoring treatment response. To improve the currently poor precision of IVIM, several fit algorithms have been suggested. In this work, we compared the performance of two Bayesian IVIM fit algorithms and four other IVIM fit algorithms for pancreatic cancer imaging. DWI data were acquired in 14 pancreatic cancer patients during two MRI examinations. Three different measures of performance of the fitting algorithms were assessed: (i) uniqueness of fit parameters (Spearman’s rho); (ii) precision (within-subject coefficient of variation, wCV); and (iii) contrast between tumour and normal-appearing pancreatic tissue. For the diffusivity D and perfusion fraction f, a Bayesian fit (IVIM-Bayesian-lin) offered the best trade-off between tumour contrast and precision. With the exception for IVIM-Bayesian-lin, all algorithms resulted in a very poor precision of the pseudo-diffusion coefficient D* with a wCV of more than 50%. The pseudo-diffusion coefficient D* of the Bayesian approaches were, however, significantly correlated with D and f. Therefore, the added value of fitting D* was considered limited in pancreatic cancer patients. The easier implemented least squares fit with fixed D* (IVIM-fixed) performed similar to IVIM-Bayesian-lin for f and D. In conclusion, the best performing IVIM fit algorithm was IVM-Bayesian-lin, but an easier to implement least squares fit with fixed D* performs similarly in pancreatic cancer patients.

7 June 2022 in Medical Image Analysis
Verified
Journal Article
Open access
TOTim Ottens
Tim Ottens
SBSebastiano Barbieri
Sebastiano Barbieri
MOMatthew R. Orton
Matthew R. Orton
RKRemy Klaassen
Remy Klaassen
HLHanneke Van Laarhoven
Hanneke Van Laarhoven
OGOliver Gurney-Champion
Oliver Gurney-Champion
Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is an MRI technique for quantifying perfusion that can be used in clinical applications for classification of tumours and other types of diseases. Conventionally, the non-linear least squares (NLLS) methods is used for tracer-kinetic modelling of DCE data. However, despite promising results, NLLS suffers from long processing times (minutes-hours) and noisy parameter maps due to the non-convexity of the cost function. In this work, we investigated physics-informed deep neural networks for estimating physiological parameters from DCE-MRI signal-curves. Three voxel-wise temporal frameworks (FCN, LSTM, GRU) and two spatio-temporal frameworks (CNN, U-Net) were investigated. The accuracy and precision of parameter estimation by the temporal frameworks were evaluated in simulations. All networks showed higher precision than the NLLS. Specifically, the GRU showed to decrease the random error on ve by a factor of 4.8 with respect to the NLLS for noise (SD) of 1/20. The accuracy was better for the prediction of the ve parameter in all networks compared to the NLLS. The GRU and LSTM worked with arbitrary acquisition lengths. The GRU was selected for in vivo evaluation and compared to the spatio-temporal frameworks in 28 patients with pancreatic cancer. All neural network approaches showed less noisy parameter maps than the NLLS. The GRU had better test-retest repeatability than the NLLS for all three parameters and was able to detect one additional patient with significant changes in DCE parameters post chemo-radiotherapy. Although the U-Net and CNN had even better test-retest characteristics than the GRU, and were able to detect even more responders, they also showed potential systematic errors in the parameter maps. Therefore, we advise using our GRU framework for analysing DCE data.

1 November 2016 in Radiotherapy and Oncology
Verified
Journal Article
Closed access
ELEelco Lens
Eelco Lens
OGOliver Gurney-Champion
Oliver Gurney-Champion
DTDaniël R. Tekelenburg
Daniël R. Tekelenburg
ZKZdenko van Kesteren
Zdenko van Kesteren
MPMichael J. Parkes
Michael J. Parkes
ABArjan Bel
Arjan Bel

21 September 2022 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
RGRosie J. Goodburn
Rosie J. Goodburn
MPMarielle Philippens
Marielle Philippens
TLThierry L. Lefebvre
Thierry L. Lefebvre
AKAly Khalifa
Aly Khalifa
TBTom Bruijnen
Tom Bruijnen
OGOliver Gurney-Champion
Oliver Gurney-Champion
Radiation therapy is a major component of cancer treatment pathways worldwide. The main aim of this treatment is to achieve tumor control through the delivery of ionizing radiation while preserving healthy tissues for minimal radiation toxicity. Because radiation therapy relies on accurate localization of the target and surrounding tissues, imaging plays a crucial role throughout the treatment chain. In the treatment planning phase, radiological images are essential for defining target volumes and organs‐at‐risk, as well as providing elemental composition (e.g., electron density) information for radiation dose calculations. At treatment, onboard imaging informs patient setup and could be used to guide radiation dose placement for sites affected by motion. Imaging is also an important tool for treatment response assessment and treatment plan adaptation. MRI, with its excellent soft tissue contrast and capacity to probe functional tissue properties, holds great untapped potential for transforming treatment paradigms in radiation therapy. The MR in Radiation Therapy ISMRM Study Group was established to provide a forum within the MR community to discuss the unmet needs and fuel opportunities for further advancement of MRI for radiation therapy applications. During the summer of 2021, the study group organized its first virtual workshop, attended by a diverse international group of clinicians, scientists, and clinical physicists, to explore our predictions for the future of MRI in radiation therapy for the next 25 years. This article reviews the main findings from the event and considers the opportunities and challenges of reaching our vision for the future in this expanding field.