Propionic acid (propionate) is a commercially valuable carboxylic acid produced through microbial fermentation. Propionic acid is mainly used in the food industry but has recently found applications in the cosmetic, plastics and pharmaceutical industries. Propionate can be produced via various metabolic pathways, which can be classified into three major groups: fermentative pathways, biosynthetic pathways, and amino acid catabolic pathways. The current review provides an in-depth description of the major metabolic routes for propionate production from an energy optimization perspective. Biological propionate production is limited by high downstream purification costs which can be addressed if the target yield, productivity and titre can be achieved. Genome shuffling combined with high throughput omics and metabolic engineering is providing new opportunities, and biological propionate production is likely to enter the market in the not so distant future. In order to realise the full potential of metabolic engineering and heterologous expression, however, a greater understanding of metabolic capabilities of the native producers, the fittest producers, is required.

Propionibacteria have been studied extensively since the early 1930s due to their relevance to industry and importance as human pathogens. Still, their unique metabolism is far from fully understood. This is partly due to their signature high GC content, which has previously hampered the acquisition of quality sequence data, the accurate annotation of the available genomes, and the functional characterization of genes. The recent completion of the genome sequences for several species has led researchers to reassess the taxonomical classification of the genus Propionibacterium, which has been divided into several new genres. Such data also enable a comparative genomic approach to annotation and provide a new opportunity to revisit our understanding of their metabolism. Using pan-genome analysis combined with the reconstruction of the first high-quality Propionibacterium genome-scale metabolic model and a pan-metabolic model of current and former members of the genus Propionibacterium, we demonstrate that despite sharing unique metabolic traits, these organisms have an unexpected diversity in central carbon metabolism and a hidden layer of metabolic complexity. This combined approach gave us new insights into the evolution of Propionibacterium metabolism and led us to propose a novel, putative ferredoxin-linked energy conservation strategy. The pan-genomic approach highlighted key differences in Propionibacterium metabolism that reflect adaptation to their environment. Results were mathematically captured in genome-scale metabolic reconstructions that can be used to further explore metabolism using metabolic modeling techniques. Overall, the data provide a platform to explore Propionibacterium metabolism and a tool for the rational design of strains.

The potential of plant growth-promoting rhizobacteria (PGPR) to improve plant growth and nutrient acquisition has received increased attention. This study investigated the synergistic effects of combining PGPR Paraburkholderia sp. SOS3 with the addition of inorganic N fertilizer (iN) or a combined application of inorganic N with organic manure-based fertilizer (iNoN) at low and high levels of N fertilization on Macadamia integrifolia seedling growth. We studied plant growth, mineral N in soil-leachate, and media physicochemical and microbial characteristics. Growth of seedlings fertilized with iNoN at high N level (iNoN 100) was enhanced by PGPR inoculation, with an increase of 32% in total biomass and 43% in N uptake, compared with uninoculated seedlings. No significant PGPR effect was observed on growth under low or high inorganic N treatments but PGPR significantly reduced N leaching after 3 weeks of fertilization. We found a positive relationship between media and plant δ¹⁵N and plant N uptake, and a strong increase in microbial-biomass N under the most productive fertilization treatment (iNoN 100 with PGPR), compared with the other N treatments (without or with PGPR). The results suggest that PGPR improves N acquisition by reducing mineral N loss and increasing plant N availability, but that these effects depend on the N form and N level.