Ahmad Sofiman Othman

Dr. Ahmad Sofiman Othman


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 June 2016 in Scientific Reports
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NLNyokSean Lau
NyokSean Lau
YMYuko Makita
Yuko Makita
MKMika Kawashima
Mika Kawashima
TTTodd D. Taylor
Todd D. Taylor
SKShinji Kondo
Shinji Kondo
MMMinami Matsui
Minami Matsui
Hevea brasiliensis Muell. Arg, a member of the family Euphorbiaceae, is the sole natural resource exploited for commercial production of high-quality natural rubber. The properties of natural rubber latex are almost irreplaceable by synthetic counterparts for many industrial applications. A paucity of knowledge on the molecular mechanisms of rubber biosynthesis in high yield traits still persists. Here we report the comprehensive genome-wide analysis of the widely planted H. brasiliensis clone, RRIM 600. The genome was assembled based on ~155-fold combined coverage with Illumina and PacBio sequence data and has a total length of 1.55 Gb with 72.5% comprising repetitive DNA sequences. A total of 84,440 high-confidence protein-coding genes were predicted. Comparative genomic analysis revealed strong synteny between H. brasiliensis and other Euphorbiaceae genomes. Our data suggest that H. brasiliensis’s capacity to produce high levels of latex can be attributed to the expansion of rubber biosynthesis-related genes in its genome and the high expression of these genes in latex. Using cap analysis gene expression data, we illustrate the tissue-specific transcription profiles of rubber biosynthesis-related genes, revealing alternative means of transcriptional regulation. Our study adds to the understanding of H. brasiliensis biology and provides valuable genomic resources for future agronomic-related improvement of the rubber tree.

12 October 2009 in Molecular Ecology Resources
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MCMolecular Ecology Resources Primer Development Consortium
Molecular Ecology Resources Primer Development Consortium
GAGlenn R. Almany
Glenn R. Almany
MAMaurício P. DE Arruda
Maurício P. DE Arruda
WAWolfgang Arthofer
Wolfgang Arthofer
ZAZ. K. Atallah
Z. K. Atallah
LZLifeng Zhu
Lifeng Zhu

1 January 2014 in BioMed Research International
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SASuganthi Appalasamy
Suganthi Appalasamy
KLKiah Yann Lo
Kiah Yann Lo
SCSong Jin Ch'Ng
Song Jin Ch'Ng
KNKu Nornadia
Ku Nornadia
AOAhmad Sofiman Othman
Ahmad Sofiman Othman
LCLai-Keng Chan
Lai-Keng Chan
Artemisia annuaL., a medicinal herb, produces secondary metabolites with antimicrobial property. In Malaysia due to the tropical hot climate,A. annuacould not be planted for production of artemisinin, the main bioactive compound. In this study, the leaves of threein vitro A. annuaL. clones were, extracted and two bioactive compounds, artemisinin and a precursor, were isolated by thin layer chromatography. These compounds were found to be effective in inhibiting the growth of Gram-positive and Gram-negative bacteria but notCandida albicans. Their antimicrobial activity was similar to that of antibactericidal antibiotic streptomycin. They were found to inhibit the growth of the tested microbes at the minimum inhibition concentration of 0.09 mg/mL, and toxicity test using brine shrimp showed that even the low concentration of 0.09 mg/mL was very lethal towards the brine shrimps with 100% mortality rate. This study hence indicated thatin vitrocultured plantlets ofA. annuacan be used as the alternative method for production of artemisinin and its precursor with antimicrobial activities.

21 April 2016 in PLOS ONE
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KNKiaw Kiaw Ng
Kiaw Kiaw Ng
YMYoko Motoda
Yoko Motoda
SWSatoru Watanabe
Satoru Watanabe
AOAhmad Sofiman Othman
Ahmad Sofiman Othman
TKTakanori Kigawa
Takanori Kigawa
KNKeiji Numata
Keiji Numata
In current plant biotechnology, the introduction of exogenous DNA encoding desired traits is the most common approach used to modify plants. However, general plant transformation methods can cause random integration of exogenous DNA into the plant genome. To avoid these events, alternative methods, such as a direct protein delivery system, are needed to modify the plant. Although there have been reports of the delivery of proteins into cultured plant cells, there are currently no methods for the direct delivery of proteins into intact plants, owing to their hierarchical structures. Here, we demonstrate the efficient fusion-peptide-based delivery of proteins into intact Arabidopsis thaliana. Bovine serum albumin (BSA, 66 kDa) was selected as a model protein to optimize conditions for delivery into the cytosol. The general applicability of our method to large protein cargo was also demonstrated by the delivery of alcohol dehydrogenase (ADH, 150 kDa) into the cytosol. The compatibility of the fusion peptide system with the delivery of proteins to specific cellular organelles was also demonstrated using the fluorescent protein Citrine (27 kDa) conjugated to either a nuclear localization signal (NLS) or a peroxisomal targeting signal (PTS). In conclusion, our designed fusion peptide system can deliver proteins with a wide range of molecular weights (27 to 150 kDa) into the cells of intact A. thaliana without interfering with the organelle-targeting peptide conjugated to the protein. We expect that this efficient protein delivery system will be a powerful tool in plant biotechnology.

12 August 2009 in Molecular Ecology Resources
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MCMolecular Ecology Resources Primer Development Consortium
Molecular Ecology Resources Primer Development Consortium
LAL. G. Abercrombie
L. G. Abercrombie
CAC. M. Anderson
C. M. Anderson
BBB. G. Baldwin
B. G. Baldwin
IBI. C. Bang
I. C. Bang
JYJ. S. Yuan
J. S. Yuan

1 September 2013 in Systematic Botany
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Journal Article
Closed access
WYWong Sin Yeng
Wong Sin Yeng
TJTan Pei Jean
Tan Pei Jean
NKNg Kiaw Kiaw
Ng Kiaw Kiaw
AOAhmad Sofiman Othman
Ahmad Sofiman Othman
LBLee Hong Boon
Lee Hong Boon
PBPeter C. Boyce
Peter C. Boyce