Efficiently creating a concise but comprehensive data set for training machine-learned interatomic potentials (MLIPs) is an under-explored problem. Active learning, which uses biased or unbiased molecular dynamics (MD) to generate candidate pools, aims to address this objective. Existing biased and unbiased MD-simulation methods, however, are prone to miss either rare events or extrapolative regions—areas of the configurational space where unreliable predictions are made. This work demonstrates that MD, when biased by the MLIP’s energy uncertainty, simultaneously captures extrapolative regions and rare events, which is crucial for developing uniformly accurate MLIPs. Furthermore, exploiting automatic differentiation, we enhance bias-forces-driven MD with the concept of bias stress. We employ calibrated gradient-based uncertainties to yield MLIPs with similar or, sometimes, better accuracy than ensemble-based methods at a lower computational cost. Finally, we apply uncertainty-biased MD to alanine dipeptide and MIL-53(Al), generating MLIPs that represent both configurational spaces more accurately than models trained with conventional MD.
ECommerce, postal and logistics’ planners require to solve large-scale capacitated vehicle routing problems (CVRPs) on a daily basis. CVRP problems are NP-Hard and cannot be easily solved for large problem instances. Given their complexity, we propose a methodology to reduce the size of CVRP problems that can be later solved with state-of-the-art optimization solvers. Our method is an efficient version of clustering that considers the constraints of the original problem to transform it into a more tractable version. We call this approach Constrained Clustering Capacitated Vehicle Routing Solver (CC-CVRS) because it produces a soft-clustered vehicle routing problem with reduced decision variables. We demonstrate how this method reduces the computational complexity associated with the solution of the original CVRP and how the computed solution can be transformed back into the original space. Extensive numerical experiments show that our method allows to solve very large CVRP instances within seconds with optimality gaps of less than 16%. Therefore, our method has the following benefits: it can compute improved solutions with small optimality gaps in near real-time, and it can be used as a warm-up solver to compute an improved solution that can be used as an initial solution guess by an exact solver.
31 October 2022 in Knowledge and Information Systems
Bilevel Optimization Programming is used to model complex and conflicting interactions between agents, for example in Robust AI or Privacy preserving AI. Integrating bilevel mathematical programming within deep learning is thus an essential objective for the Machine Learning community. Previously proposed approaches only consider single-level programming. In this paper, we extend existing single-level optimization programming approaches and thus propose Differentiating through Bilevel Optimization Programming (BiGrad) for end-to-end learning of models that use Bilevel Programming as a layer. BiGrad has wide applicability and can be used in modern machine learning frameworks. BiGrad is applicable to both continuous and combinatorial Bilevel optimization problems. We describe a class of gradient estimators for the combinatorial case which reduces the requirements in terms of computation complexity; for the case of the continuous variable, the gradient computation takes advantage of the push-back approach (i.e. vector-jacobian product) for an efficient implementation. Experiments show that the BiGrad successfully extends existing single-level approaches to Bilevel Programming.
18 December 2023 in The Journal of Chemical Physics
The performance of Hamiltonian Monte Carlo simulations crucially depends on both the integration timestep and the number of integration steps. We present an adaptive general-purpose framework to automatically tune such parameters based on a local loss function that promotes the fast exploration of phase space. We show that a good correspondence between loss and autocorrelation time can be established, allowing for gradient-based optimization using a fully differentiable set-up. The loss is constructed in such a way that it also allows for gradient-driven learning of a distribution over the number of integration steps. Our approach is demonstrated for the one-dimensional harmonic oscillator and alanine dipeptide, a small protein commonly used as a test case for simulation methods. Through the application to the harmonic oscillator, we highlight the importance of not using a fixed timestep to avoid a rugged loss surface with many local minima, otherwise trapping the optimization. In the case of alanine dipeptide, by tuning the only free parameter of our loss definition, we find a good correspondence between it and the autocorrelation times, resulting in a >100 fold speedup in the optimization of simulation parameters compared to a grid search. For this system, we also extend the integrator to allow for atom-dependent timesteps, providing a further reduction of 25% in autocorrelation times.
9 August 2018 in IEEE Transactions on Intelligent Transportation Systems
Today, we live in an era where pervasive sensor networks both collect and broadcast rich digital footprints about the human mobility. However, most of this data often comes in an incomplete and/or inaccurate fashion. In this paper, we propose a knowledge discovery framework to handle such issues in the context of automatic incident detection systems fed with traffic flow data. This framework operates in three steps : 1) it clusters sensors with a novel multi-criteria distance metric tailored for this purpose, followed by a heuristic rule that labels the abnormal groups; 2) then, a spatial cross-correlation framework identifies seasonal and individual abnormal readings to perform a more fine-grained filtering; and 3) finally, we propose a novel fundamental diagram that discovers the critical density of a given road section/spot on a data-driven fashion that is resistant to both outliers and noise within the input data. Large-scale experiments were conducted over traffic flow data provided by a major Asian highway operator. The obtained results illustrate well the contributions of this framework: it drastically reduces the noise within the raw data, and it also allows determining reliable definitions of traffic states (congestion/no congestion) on a completely automated way.